Protein Info for MIT1002_02010 in Alteromonas macleodii MIT1002
Annotation: DNA recombination protein RmuC
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 52% identical to RMUC_YERPE: DNA recombination protein RmuC homolog (rmuC) from Yersinia pestis
KEGG orthology group: K09760, DNA recombination protein RmuC (inferred from 90% identity to amc:MADE_01951)Predicted SEED Role
"DNA recombination protein RmuC" in subsystem DNA repair, bacterial
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (429 amino acids)
>MIT1002_02010 DNA recombination protein RmuC (Alteromonas macleodii MIT1002) MLINLISSEPISFLIAFVSVCAFSLYSFIRGQANATKIAQLSQINEQLQNDLNSERIAIA KLQAQNEAHQARIQALHAAHEDKLASMNASEQRLHTQFENLANRIFEEKQQRYTQQTKHN IEAVLAPFKNELDGFKRQISEQHIREGQERASLKTEILSLKALNQKITEEAAALTNALKG DNKKQGNWGEVVLERILKESGLREGHEFETQMSATSEHGKRFQPDVVVHLPNDKDVIIDS KVSLAAYERYYNCDDEAEKAQFLSQHVASIKGHIKGLGAKDYQTLKGIKTLDYVLLFIPI EPAFLIAVEEEPDLVTMALNHNIMLVSPTNLLVALRTINNIWQYEYQNQNAQLIAEQAAK LYDKFVGFVTDMEKVGKSMDIAHANYEQAMNKLTSGRGNLVRQIEKFRELGVQPSKRMSQ HLQQLSQDD