Protein Info for MIT1002_01962 in Alteromonas macleodii MIT1002

Annotation: Maltogenic alpha-amylase precursor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 565 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF00128: Alpha-amylase" amino acids 52 to 418 (367 residues), 146.5 bits, see alignment E=7.6e-47

Best Hits

KEGG orthology group: None (inferred from 87% identity to amc:MADE_01890)

Predicted SEED Role

"Cyclomaltodextrin glucanotransferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (565 amino acids)

>MIT1002_01962 Maltogenic alpha-amylase precursor (Alteromonas macleodii MIT1002)
MSFNRTTIALTLAGLFCSACSSTSVPSSNDIQENSHAIVGTATPFASEAVYFVVTDRFVD
GDPSNNHEEQGGDHPTWQLPLEGPDGKKAYVGYMGGDLQGILNNAEYIKEMGFTAVWMTP
VHDNPDYAFNGDEPITYGGAFKDGGKTGYHGYWATNFYKADEHLVSANLSVSDYTAKMRQ
HGLKSVFDIVANHGTPSFTMEKDLPGYGEIYDSDGNLVADHQNLAPEELDPENNPLHSFF
HNYPDLVKLSNLDDENPAVRDYLINSYLYWISQGADAFRIDTIRHVPHAFWREASDRIRE
QNPDFFMFGEAFDYEANNIAQHTLPKNGGVSVLDFPMQKAMVSVFEKPLESDFADLETVL
HLTHGPYNNPYELTTFYDNHDMARINATDEGFINAHNWLFTVRGIPVVYMGSEIGFMRGT
AEHAGNRNYVGQERLDQAKTHPIQQALTKIANVRKNTVALQRGVQVNVELDGHQAAFYRV
VDTAETQQTALVLLNKGNAAQSFEVSDFMQSGDWTEQLSGETQTVKLGDALTATVKPNGV
QVWVREGQVSNSALLAQIKHQLARQ