Protein Info for MIT1002_01922 in Alteromonas macleodii MIT1002

Annotation: Chromosome partition protein Smc

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1175 PF13175: AAA_15" amino acids 1 to 63 (63 residues), 35.4 bits, see alignment 1.9e-12 TIGR02168: chromosome segregation protein SMC" amino acids 2 to 1166 (1165 residues), 1031.4 bits, see alignment E=0 PF02463: SMC_N" amino acids 3 to 1159 (1157 residues), 186.1 bits, see alignment E=1.3e-58 PF13476: AAA_23" amino acids 5 to 229 (225 residues), 73.5 bits, see alignment E=7.8e-24 PF13304: AAA_21" amino acids 26 to 83 (58 residues), 28.3 bits, see alignment 3.6e-10

Best Hits

Predicted SEED Role

"Chromosome partition protein smc" in subsystem Two cell division clusters relating to chromosome partitioning

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1175 amino acids)

>MIT1002_01922 Chromosome partition protein Smc (Alteromonas macleodii MIT1002)
MRLKKIKLAGFKSFVEPTTIPFPGEMTAIVGPNGCGKSNVIDAVRWVLGESSAKNLRGDA
MTDVIFNGSSSRKPVGQCSVELVFDNSAGRIAGEFANYNELSVKRLVTRDATSTYFLNGT
KCRRRDVTDLFLGTGLGPRSYAIIEQGMISRLIESKPQDLRVFIEEAAGISKYKERRRET
ENRIRHTQDNLERLNDVRDELGKQLEKLQRQAAAATRYKTLRAQARELKGQLAALRFLKN
SEHIEALQKQQQSLQLEVDDLVARLQGDEAGLESYKTKQLETKQTIDDLQQQLFTTSNAI
TRLEQNALHAKQRKGQVEQELARISEQHELLNHSIDEAQEALAVSNEALENIEPEFALKE
AELEHAKERFEDAEQALREFNAQARAQEQTYNQLRQNVQQCHSQIQSTMSMQLRTSQRIS
ELQDELKQLDEEDFASQITLLEEQCSELDFDIDEAKQLLQESNQKVSQQQGEVNAIEAKR
RDVQGQLQTALSTKAALEALQQDASNNEDVLLDGIEKLWQQFSSNQTLAPCVESILQHAK
DPVVAKSHDIQALLQNRAYLPSGIKVFTDKAFVSTARVGSLAHALLTESSTNESSTQRVP
AFFNDIYLCSNDDELAEMIESAFNNEPEPEGIAKGFTSAISPSGLWASSQWVVKPGEASD
GALQRANKIKGLVDSIEETESLIDEIEYSLERAKQALEQSEAQKQAIQSALGEKENQRAQ
IKNKLSLLEMQQEQQSTRTAKLNDELAKQELMLAKEEEQLAQLSEKLELQEAQILEHEVH
IDDVNAKRDANERTTSELRALVDTLTSQNHELALKKQQLENHQNLYSQQVTRNLQQREEY
IKNKERLQKELTQLTSPEEIQEAELQSLLENKAELEQLKSAKQSSLEDIEQWLREAEKGH
QALGKDIQTRQTNIDKLNIDIEGYRVRANTILEQLDETQQSLKSILETLPEDAEEKRWQE
DLEKTQANLQRLGAVNLAAVEEYETQSERKSHLDTQHNDLTEALETLQSAIRKIDKETRT
RFSTTFEQVNEDLKTLFPKVFGGGSAYLALTDDDLLETGVTIMARPPGKKNSTIHLLSGG
EKALTALSLVFAIFRLNPAPFCLLDEVDAPLDDANVGRFCNLVSEMSQTVQFIYITHNKI
AMEMASHLTGVTMAEPGVSRMVAVDVDEAVAFAEA