Protein Info for MIT1002_01898 in Alteromonas macleodii MIT1002

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 156 signal peptide" amino acids 1 to 42 (42 residues), see Phobius details transmembrane" amino acids 43 to 45 (3 residues), see Phobius details amino acids 68 to 88 (21 residues), see Phobius details amino acids 100 to 118 (19 residues), see Phobius details amino acids 130 to 151 (22 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 65% identity to shm:Shewmr7_2174)

Predicted SEED Role

"acyltransferase domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (156 amino acids)

>MIT1002_01898 hypothetical protein (Alteromonas macleodii MIT1002)
MWIYGITMKSKLSLAQYVKKRNGVLLGASGSMTNMLSRSFGAASFPMFWHYWNPIWDYYL
SRNVMRPLASFLPISLATFLTFLVSGALHDLAVSIVELKTIIFFTPWFGLMGLIVVVSKR
AGISYGHVSWPVRALFNASFIIASLGLTYFLEKLYA