Protein Info for MIT1002_01791 in Alteromonas macleodii MIT1002

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 554 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details PF03572: Peptidase_S41" amino acids 269 to 420 (152 residues), 56.4 bits, see alignment E=1.4e-19

Best Hits

KEGG orthology group: None (inferred from 85% identity to amc:MADE_01781)

Predicted SEED Role

"carboxyl-terminal protease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (554 amino acids)

>MIT1002_01791 hypothetical protein (Alteromonas macleodii MIT1002)
MKAYTYSSVALAVTISLLAGCGGGSGSSNTPPVVTTPTTPTTPVTTEPEWEAGVYEPQSQ
YLAKCETPRSGIDPFTNRAYPDTQGTAMDEKLWLRTWTNDTYLWYDEVDDNDPANFSVLG
YFDQLKTNELTPSGTPKDNFHFSQDTAEYNELSQSGISSGYGFDWEFGSTTVPRVLTVRF
TEPGSPAATAGVPRGATLSRINGVDFVNDNTQQGVNAINAALFPEDAGTVTSFEFVQVDG
STLSVDITSGDISVTPVQNAKVLDTENGKTGYFQFNTFIVTAQEGLIDAFDMFVEENVTE
LVIDLRYNGGGRLALASQLSYMIAGPNQTNNATFETLRFNDKNPNTNPVTGETIRPTPFY
RNVIDYNAGQLTDTLLPSLSLTKVYVLATGATCSASEAVMNALRGIDVEVVQIGSTTCGK
PYGFYPTDNCGETYFTIQFQGVNNKGFGDYADGFMPTTTPNFDFELPGCEVEDDFTASLG
DPNEGMLSAALEYAATGSCPEVVTSNGVADVKALRSNQSALGGEKLIPIDKPEQRKENFI
LHNKINQPVIQERK