Protein Info for MIT1002_01725 in Alteromonas macleodii MIT1002

Annotation: Ribosomal large subunit pseudouridine synthase C

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 313 TIGR00005: pseudouridine synthase, RluA family" amino acids 18 to 313 (296 residues), 301.7 bits, see alignment E=2.8e-94 PF01479: S4" amino acids 21 to 67 (47 residues), 36.1 bits, see alignment 4.3e-13 PF00849: PseudoU_synth_2" amino acids 102 to 250 (149 residues), 107.3 bits, see alignment E=9e-35

Best Hits

Swiss-Prot: 66% identical to RLUC_ECO57: Ribosomal large subunit pseudouridine synthase C (rluC) from Escherichia coli O157:H7

KEGG orthology group: K06179, ribosomal large subunit pseudouridine synthase C [EC: 5.4.99.12] (inferred from 96% identity to amc:MADE_02339)

MetaCyc: 66% identical to 23S rRNA pseudouridine955/2504/2580 synthase (Escherichia coli K-12 substr. MG1655)
RXN-11838 [EC: 5.4.99.24]

Predicted SEED Role

"Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70)" in subsystem Ribosome biogenesis bacterial (EC 4.2.1.70)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 4.2.1.70, 5.4.99.12

Use Curated BLAST to search for 4.2.1.70 or 5.4.99.12 or 5.4.99.24

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (313 amino acids)

>MIT1002_01725 Ribosomal large subunit pseudouridine synthase C (Alteromonas macleodii MIT1002)
MKEEAPQKVRFVTVEADLAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKGRVKPEYK
LQADDLIRIPPVRVSEGAPAPSPKLDKIASLESHILFEDDRILVINKPSGMAVHGGSGLS
FGLIEGLRALRPDAKFMELVHRLDRDTSGCILIAKKRSALRHMHEQLRTGKMDKRYNALV
AGEWPKTRFKVKAPLRKNVLQSGERMVSVSDDGKPSETRYRILEEYAGATLVEASPITGR
THQIRVHCLHAGHPIACDPKYGDADFDAAMRQKGLNRLFLHARSISLLHPATEERVTFTA
PLDDTLSNTLKAL