Protein Info for MIT1002_01708 in Alteromonas macleodii MIT1002

Annotation: Transposase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 544 transmembrane" amino acids 454 to 471 (18 residues), see Phobius details PF14104: DUF4277" amino acids 12 to 118 (107 residues), 143 bits, see alignment E=4.5e-46 PF01609: DDE_Tnp_1" amino acids 145 to 466 (322 residues), 43.1 bits, see alignment E=4.4e-15

Best Hits

KEGG orthology group: None (inferred from 100% identity to amc:MADE_00174)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (544 amino acids)

>MIT1002_01708 Transposase (Alteromonas macleodii MIT1002)
MAISTTSLSGLTIKRMDHLGLVSGMCRELGIAKMIDAVIPKNNEHKVTHGEAFVAMLLNG
LGFHSRTLHMFADFFADKPTERLIGPGVQAKHLNDDVLGRCLDALYEADVSSLYQVMAER
VVDTLGLASNAVHLDITSFHVDGEYAVDEQDSETKRIELVKGYSRDHRPELNQVILELIC
ENQAGIPVYMQALSGNTNDQKAFAEVTRHHIQCLKAAQQCRYFVADAALYTEESITALAT
QNQLFISRVPMTIKDARQHVSNVTEASLTAMSNGYHGCWVDADYAGVKQKWLILRSEQAT
KREQQTLARNLLKSSEKEHKQFIKLCKQRFACQTDAETAMKVFSKTLKTTRISEFDCIAH
PVFLGKGRPKKGQQPAYYEYQLDGLIATCLDKVGIAQAQTGMFILATNDCSGELSMQTLL
DTYKSQQHVERGFRFLKSPEFLTSSLFLKKPERIEALLMVMTCSLMIYAALEHRIRTSLK
ERQQYFPDMKKKPSQKPTARWVFLCFSGIHEVSIGDSPPVITDKQERQQVIIDVLGTLYQ
EIYS