Protein Info for MIT1002_01685 in Alteromonas macleodii MIT1002

Annotation: ATP-dependent RNA helicase HrpB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1331 TIGR01967: RNA helicase HrpA" amino acids 65 to 1327 (1263 residues), 1852.9 bits, see alignment E=0 PF00270: DEAD" amino acids 112 to 257 (146 residues), 34.7 bits, see alignment E=4.6e-12 PF13401: AAA_22" amino acids 117 to 251 (135 residues), 28.1 bits, see alignment E=6.9e-10 PF00271: Helicase_C" amino acids 303 to 425 (123 residues), 46.5 bits, see alignment E=1.2e-15 PF21010: HA2_C" amino acids 527 to 586 (60 residues), 32.1 bits, see alignment (E = 4.1e-11) PF07717: OB_NTP_bind" amino acids 650 to 726 (77 residues), 61.7 bits, see alignment 1.9e-20 PF11898: DUF3418" amino acids 739 to 1328 (590 residues), 676.4 bits, see alignment E=1.2e-206

Best Hits

KEGG orthology group: K03578, ATP-dependent helicase HrpA [EC: 3.6.4.13] (inferred from 94% identity to amc:MADE_02394)

Predicted SEED Role

"ATP-dependent RNA helicase HrpA (EC 3.6.4.13)" (EC 3.6.4.13)

Isozymes

Compare fitness of predicted isozymes for: 3.6.4.13

Use Curated BLAST to search for 3.6.4.13

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1331 amino acids)

>MIT1002_01685 ATP-dependent RNA helicase HrpB (Alteromonas macleodii MIT1002)
MSSTLAIKPLYNKLDDCLSADKFRLKRRITQLAQKVNDTSGVEGKGAEKNAANSKGSKRD
SVVSEESLKAQFEKLEGDINASIEKRNWRKDNLPKVEYPPLPVSDKKEDIKEAIANNQVV
IVAGETGSGKTTQLPKICLELGRGVNGMIAHTQPRRLAARSVATRIAEELNTPLGEKVGF
KIRFSDQVSERSYVKLMTDGMLLAEMQQDRFLNQYDTIIIDEAHERSLNIDFLLGYLRQL
LDKRPDLKLIITSATIDPERFSKHFNNAPIIEVSGRTYPVEIRYHAPEDNDDDIDQSDAI
VNAVDELMREAPGDILVFLSGEREIRDTQDALSKQHYRNTEIVPLYARLSAAEQNRIFQS
HSGRRIVLATNVAETSLTVPGIKYVIDPGFARISRYSARSKVQRLPIEPISQASANQRAG
RCGRVSDGICIRLYSEDDYLGRPEFTDPEILRTNLASVILQMLALGLGDIAAFPFVQPPD
NRNINDGFRLLEEIQAIAKGKDNRKTKQSGKMQLTPLGRQVARLPIDPRYARMVIEAERT
NALSEVMVIAAGLSIQDPRERPQEKRQQADEKHSEYHDKDSDFISLYNLWVAFREQQNAL
SQNQLRKWCKQNFINYLRMREWQDIVSQLKKSIAELGFGISKQEADYQAIHQAIASGLLS
HMGFKDKEREYMGSRNSRFLIFPGSGLSKSQPKWVMAAELVETSKLFARMVAKIDPAWVE
PLAEHVVQRSYSEPHWSKKRGAVIAFEKVTLFGLPIVMKRAKVYSLIDPPICHELFIREA
LVEGNTKLNYSFLQENQALLEQADEFEQKTRRRDLIVDDEELVSFYAKRIPVEANNDAAF
KKWFKQHGSNDSLTFKEEDVYRQQPGQSVANAFPDVWRQGNITLPLRYNFEPNAEDDGVT
VVIPLPVLNQVDNVGFDWLVPGLRHDLIVGLIKTLPKRLRRNFVPAPNFAEACLADICET
DKNNRPVPLLEAVTDKLRKMTGVIIESEEWNLEQLDKHLKMHFAVVNDNGDDIAKGDDLH
ALKQQCAGQVKQTFEKAATPELERNNIEQWDFESLPETFVQKVGGFEVQAFPALVQKGDK
VDIALIEEADKAQVLHKQGVNVLIKNAMPSPLNYLQSKLPNKAKLGLYFNPFGQVKALID
DCIFAGIDAIVSDYCKTNNTDIRSKADFEACLEIARANINDRVLEIATQVEQGLTLAHQC
QKQMKGNVPLTMINALGDCKAHLASLVFPGFVSEIGESRLDDWNRYIKGLARRLEKLPID
PNKDRMHQVTVEKSIKEWEKACSKYPKGKVPQALNDVRWMIEELRVSLFAQQLGTAYPIS
AKRITLHLADF