Protein Info for MIT1002_01672 in Alteromonas macleodii MIT1002

Annotation: Alpha/beta hydrolase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 409 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details PF20434: BD-FAE" amino acids 189 to 371 (183 residues), 70.9 bits, see alignment E=3.3e-23 PF12146: Hydrolase_4" amino acids 193 to 330 (138 residues), 29.4 bits, see alignment E=1.5e-10 PF07859: Abhydrolase_3" amino acids 196 to 346 (151 residues), 41.1 bits, see alignment E=5.2e-14 PF12697: Abhydrolase_6" amino acids 196 to 393 (198 residues), 28.1 bits, see alignment E=9.7e-10 PF01764: Lipase_3" amino acids 247 to 295 (49 residues), 23.7 bits, see alignment 1.2e-08

Best Hits

Predicted SEED Role

"Possible kynurenine formamidase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (409 amino acids)

>MIT1002_01672 Alpha/beta hydrolase family protein (Alteromonas macleodii MIT1002)
MKTVTNVINSITLAVALSTITLVTKVQADSSFSVNSTYVDTHDNNGTHYEESRSLSSTED
THDDLTLSALHETQSTVDVSNNAVSEDTHTNEEKKTSDDTHANSAHANSESSAIYPKKIS
QVPYSALGVLPTSAHANSESSAIYPKRISQVPYSALGVLPTSEADEQFSYGDDPLQTIYT
WHGRSSTNEKYADKALIFIHGGCWLNAYGYEHAKGMYHALAELGMGVYVTEYRRVGDEGG
GWPGSLDDVTQAISTALKRIENEGRYTNIYIAGHSAGGHLALLAAQRLSSSSLSLSRANI
KRIIGLAAITDIQSYAMGHNSCQSATAKFMNGTPEDVPTAYQRATPRPTHGSLPITLLQG
DADSIVPARHAVLSGTNPKIIKNGGHFDWLHPESTSFDALLEVISEHDE