Protein Info for MIT1002_01670 in Alteromonas macleodii MIT1002

Annotation: Zn(II)-responsive regulator of zntA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 135 PF13411: MerR_1" amino acids 10 to 75 (66 residues), 59.4 bits, see alignment E=4.5e-20 PF00376: MerR" amino acids 12 to 46 (35 residues), 42 bits, see alignment E=9.8e-15 PF09278: MerR-DNA-bind" amino acids 52 to 117 (66 residues), 62.5 bits, see alignment E=7.3e-21

Best Hits

KEGG orthology group: None (inferred from 97% identity to amc:MADE_02411)

Predicted SEED Role

"Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family" in subsystem HMG CoA Synthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (135 amino acids)

>MIT1002_01670 Zn(II)-responsive regulator of zntA (Alteromonas macleodii MIT1002)
MSKYDDETTYAIGELAREFDITPRSIRFYEEQGLMSPSRTGQNRVYLNKDRVRLKLILRG
KRLGFSLAEVKTLFDMYDTNPNSAIQLEAMLEMTEQKRAVLKQQLEDIQMLMTELDDVEA
RCREELAELKRGNIA