Protein Info for MIT1002_01663 in Alteromonas macleodii MIT1002

Annotation: Major Facilitator Superfamily protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 384 signal peptide" amino acids 1 to 18 (18 residues), see Phobius details transmembrane" amino acids 27 to 46 (20 residues), see Phobius details amino acids 71 to 92 (22 residues), see Phobius details amino acids 98 to 117 (20 residues), see Phobius details amino acids 137 to 158 (22 residues), see Phobius details amino acids 167 to 189 (23 residues), see Phobius details amino acids 210 to 232 (23 residues), see Phobius details amino acids 244 to 264 (21 residues), see Phobius details amino acids 271 to 289 (19 residues), see Phobius details amino acids 295 to 312 (18 residues), see Phobius details amino acids 332 to 353 (22 residues), see Phobius details amino acids 360 to 380 (21 residues), see Phobius details PF07690: MFS_1" amino acids 251 to 382 (132 residues), 33.6 bits, see alignment E=1.1e-12

Best Hits

KEGG orthology group: None (inferred from 76% identity to amc:MADE_02419)

Predicted SEED Role

"Permease of the major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (384 amino acids)

>MIT1002_01663 Major Facilitator Superfamily protein (Alteromonas macleodii MIT1002)
MKQKKLLITGLSLNKLADLLISAKTTLTALLISIGAPVWMIGWLVPIRESGALLPQVLIS
IYLRKHTQRHLVWRVGMLTQTLSVFCMLIAAISFSGGLAGTLILISLVFLSLGRSACSLT
VKDMEADVATKGERGNLIGIASTVSGMVTLVIAIPLTIYDGSLSSNVLLIVLFGSLLSFV
LTLICVWPVKTTVDVGDKEEKAFSIDFDATVYKFILVRGLFVHSALVAPYFMIEKNGDVK
ELLPIYIGAEATAALLSSIIWGKIADKSAKLTLQISGVLTIISCIGLLTLQTTTIVTSAL
LFFLLSVSHAGVRTGRKTYSLDVKEGHERTELVGFSNTAIGMILLAFGALYAALTPVLTF
SVVYIMAGMLLLAIITTVILPDEK