Protein Info for MIT1002_01651 in Alteromonas macleodii MIT1002

Annotation: putative membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 213 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details transmembrane" amino acids 37 to 56 (20 residues), see Phobius details amino acids 63 to 88 (26 residues), see Phobius details amino acids 100 to 119 (20 residues), see Phobius details amino acids 130 to 159 (30 residues), see Phobius details amino acids 172 to 197 (26 residues), see Phobius details PF01891: CbiM" amino acids 6 to 201 (196 residues), 53.9 bits, see alignment E=1.1e-18

Best Hits

KEGG orthology group: None (inferred from 88% identity to amc:MADE_02431)

Predicted SEED Role

"Arginine/ornithine antiporter ArcD" in subsystem Arginine Deiminase Pathway or Arginine and Ornithine Degradation or Polyamine Metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (213 amino acids)

>MIT1002_01651 putative membrane protein (Alteromonas macleodii MIT1002)
MSSLQLLALLIYGVFLLGAVRHVDFTHFASNKQQQHLIFGTAASLFVLWLFKAGIFEGLD
VHFLGLSVLTLMLGFRNAIIASFIALLGANAVGYGSWENFGVNGLLGTVLPIGITYLFYM
LSFHRIPRQLFVYIFVCAFFPAALSIALKTLTLGAFYYIEGTYTWDIIFDNYVLLIPLLV
FPEALLNGMAITLLVIYQPTWVYTFHDKFYLDN