Protein Info for MIT1002_01561 in Alteromonas macleodii MIT1002

Annotation: Swarming motility protein SwrC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1015 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 331 to 351 (21 residues), see Phobius details amino acids 358 to 377 (20 residues), see Phobius details amino acids 387 to 410 (24 residues), see Phobius details amino acids 431 to 449 (19 residues), see Phobius details amino acids 461 to 484 (24 residues), see Phobius details amino acids 523 to 543 (21 residues), see Phobius details amino acids 858 to 878 (21 residues), see Phobius details amino acids 885 to 905 (21 residues), see Phobius details amino acids 911 to 931 (21 residues), see Phobius details amino acids 958 to 975 (18 residues), see Phobius details amino acids 978 to 1005 (28 residues), see Phobius details PF00873: ACR_tran" amino acids 1 to 1010 (1010 residues), 521.3 bits, see alignment E=2.4e-160

Best Hits

KEGG orthology group: None (inferred from 96% identity to amc:MADE_02530)

Predicted SEED Role

"Acriflavin resistance protein" in subsystem Multidrug Resistance Efflux Pumps

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1015 amino acids)

>MIT1002_01561 Swarming motility protein SwrC (Alteromonas macleodii MIT1002)
MVEYFFRQKVISWMVAIILGVGGIVTFLGLGQLEFPEFTIRNALVITQYPGATPEQVEEE
VTLQLEKAIQRIPNVKRISSVNMVGLSQITVELKSSVQAKDLEQYWDNLRRKVGDAQASL
PPGTSTSIVNDDFGDVFGLLLTLKSEDYSLKQMEDFADLMQREIQLVDGVKKVSIAGTVN
EQIIVSLDHDKMKTLNVSAESIAGLLTAQNVVGNAGSIKVQGKRLSIQPTGEFDNLEALG
QVVIGSPASGLIRLTDIATIERKLNDTPSILYHSSGTPALSIGVSFASAVNVVDVGKRLD
SKIAELEQRMPLGMTLDTVYNQPTVVDDSVTGFLINLVEAVAIVIFVLLLFMGWRSGVLM
GLILVLTILGTFILMSVKGIELQKISLGALIIALGMLVDNAIVVTEGMLIGVRKGQTKLQ
AAKDVVSQNGLPLLGATVIAITAFAPIGLSPDATGEFVGSLFWVLCFSLFLSWITALTIT
PFFFDLLFKTEKERGANDEDDDPYKGIIFTVYKRVLTAAINHRYVTIVLVLVALVGSMAS
GKFVKNAFFPDSSTPLFFVDLWLPEGSDILTTEQSIRRLEDNVLGMENIANVTSVIGGGA
QRLTLTYAPEDRYASYGQLIVETDTVESRDARMREIIELVREDFPNVQYKVKALQVGPSA
KAAIEARIYGPEPEVLREISSDIEAIFQAEKTMDSVRLSWSNKVPFVEPVFLEEQARRIG
VTRDAVHTAFLLNNEGETVGLYREGSDLIPIVMRNDPNQRYDIDNLASLNVWSQEQGKYI
SMADVISNVDVSLDNPIIKRRNRVRMLAVYAEPMPLSGETAASVQAKVRPLVEELQLPDG
YHIEWGGEYETSTDAQSALFASMPIGILGMFIITVLLFGKLRQALAIWGVIPLTTIGIIG
GLVLVGAPFTFMALLGSLSLIGMVLKNGIVLMEEINVQAKGNSGAFDAVVAASVSRVRPV
SMAAITTILGMIPLFSDAFFASMAVVIVFGLTVATVLTLLILPVLHCTFHGIKSE