Protein Info for MIT1002_01559 in Alteromonas macleodii MIT1002

Annotation: Cyclic di-GMP phosphodiesterase YfgF

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 644 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details transmembrane" amino acids 147 to 169 (23 residues), see Phobius details PF00990: GGDEF" amino acids 236 to 388 (153 residues), 55.7 bits, see alignment E=5.2e-19 PF00563: EAL" amino acids 423 to 638 (216 residues), 170.1 bits, see alignment E=5.3e-54

Best Hits

KEGG orthology group: None (inferred from 62% identity to amc:MADE_02531)

Predicted SEED Role

"GGDEF and EAL domain proteins"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (644 amino acids)

>MIT1002_01559 Cyclic di-GMP phosphodiesterase YfgF (Alteromonas macleodii MIT1002)
MKLSSQINLGVFALMLLAFTVLSSIELSEIKSRTSVSIEQEAEEARLRYETTVLQTSAMS
SQSKQSVIDAMLRQMVLQPFLSAAKVIDVEGNVFAKYERSPNTIVPNWYLQLDSAPAVNK
KIPFSNNDGYLLVTSDTSYIYTEITAILIKNAVIFCGLFFALALYIVTVTKFARRPIANT
IKKLNEINSHDFTPSQVNAFTTDYRQLTSTVNTLTTSLASKFNDIAQQSERFKTEANKDT
LTKLSNRSAFERHTRALLSDTSNFQEKELILIRLAQLTTINTKLGMLAGDNYVKSIADFL
VHEAKHNCKSGFVFRLSGGDFALISEIMGRDERDLMLENMSKQFANATPLRDGSKATWMG
VTRFSSQMSLQQVMESADSALMAAMKTQKGWQFSSEVSQVHSNTKWRERLNYIVSQQYAD
ILIQPVMNVERNAPAYYETFARFKDKDTNDVIPMAQLIPASERLDLIPQVDKLVAGIVFK
KLTVTSHQVAINISNASIANGEFRKWLIEELRTRETLCPRLIFEVEDAALIHHREVAENF
CRQLIQLGCRITIEHFGDNFASLAGLRAIQPQFVKLSGRLTQGIHTNKDNQLFVSSLINI
AKGLNIHVIAEMVENEAESVALSKLDVEHQQGYYFSKPSLWTMY