Protein Info for MIT1002_01469 in Alteromonas macleodii MIT1002

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 616 transmembrane" amino acids 20 to 45 (26 residues), see Phobius details amino acids 53 to 78 (26 residues), see Phobius details amino acids 134 to 152 (19 residues), see Phobius details amino acids 160 to 181 (22 residues), see Phobius details amino acids 192 to 210 (19 residues), see Phobius details amino acids 229 to 251 (23 residues), see Phobius details amino acids 271 to 296 (26 residues), see Phobius details amino acids 388 to 408 (21 residues), see Phobius details amino acids 433 to 453 (21 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 75% identity to alt:ambt_11450)

Predicted SEED Role

"FIG00921606: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (616 amino acids)

>MIT1002_01469 hypothetical protein (Alteromonas macleodii MIT1002)
MAYDFGSQTLGIKNPFKTEGVLRTLGGVLTLLLAVYVVFTVPAIFEANKVKGYTLLAVGF
VLVVSGIRHTAVGILQLMRFFVGRTVPTSLAYNFSKSEQDAAQAEQKSLLYSKESLHSML
MGRRNTTFEEPKGWLARLVHSVFPKLVFLPYPLRHLAQEILAMGATLIVGLVTYAIVYFL
VSNGFAGEVAKIVVMPVLSLLLLIYFVANWSSTAKGIHNEGNSQLAKAGGLSIGVIIGLA
LVVPLGAGVFLDGVVGSNINELKTWSEEHAFFSAWLNFVYLFISIGVVIGLVFPLLKKRM
DLVTPQTEVSEFRANMQESVHPNEIFINIENIVLANRRYKEVPNRIYADFVPKLKEQAEG
KGSFEGELLIETQPTLSEGLALPRGAKVALSAIAQVAVVVAAVLFYSSGVQLAELLHLVI
NIGVDNSALLNNAFSMVNNLLMLIFAWLTFRAAGSILNNASHMFWGELNFNSLLMYMKTE
GTYTESRVSTGMAIHDSTRSENVVVRSSITPWIITSRINTSIFATSGMNNLEAPRFVMGM
NKNDGELKEIVDEIKAFLRGRETIASITNESDLANASTIHQVNQQTRAFNKNPDDRLTLK
ETEESAGFLRNEKDSE