Protein Info for MIT1002_01281 in Alteromonas macleodii MIT1002

Annotation: putative O-linked N-acetylglucosamine transferase, SPINDLY family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 687 transmembrane" amino acids 13 to 31 (19 residues), see Phobius details amino acids 65 to 84 (20 residues), see Phobius details amino acids 96 to 110 (15 residues), see Phobius details amino acids 318 to 344 (27 residues), see Phobius details PF13519: VWA_2" amino acids 99 to 205 (107 residues), 51.3 bits, see alignment E=3.4e-17 PF00515: TPR_1" amino acids 445 to 478 (34 residues), 30 bits, see alignment (E = 6.7e-11) PF07719: TPR_2" amino acids 445 to 477 (33 residues), 31 bits, see alignment (E = 3.2e-11)

Best Hits

Predicted SEED Role

"TPR domain protein in aerotolerance operon"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (687 amino acids)

>MIT1002_01281 putative O-linked N-acetylglucosamine transferase, SPINDLY family (Alteromonas macleodii MIT1002)
MEFDFLNQFHFLRPEWFIALVPLMLLVLLIRKTTAKQSGWQSVIPSHLYQYMVIGKNEMG
AKPPMWMLALVWIISVIALAGPTWERLPQPVYQLKMGHVIVIDMSLSMRATDMTPDRLTR
AKYKAIDLVNAIGEGEMGLVAYAGDAFVISPLTEDAGNITTLIPSLSPEIMPVPGSDPLL
GIESASELLTNAGYNSGMIYWITDGIELEQQQELQEYVASIPFTVNALTVGTSEGAPIRQ
QSGELLKDFTGSIVIPKLNEGAVKGVVKTSGGRFESFTSNDTDIDALASVSLLDKSDSEE
NEEESNLQGDQWKEVGPYLLLILLPFAAFAFKRGLVFIVLVGLLSPSMIKNAHALQRAQP
SEIAGTSQGIGAPEDTLEMANKPDSLSWWQTPFMNDNQEALNSYQRGKYKDAVNQFNDDT
WKASSLYKSGDYEGALNAFKSIPGAESLYNQGNSLAKLGKLEDAIKKYEQALSEAPDFDD
ARTNKKIVEDLLKQQQQQNQDQNQNENGDDGEQSDSQDNGQDSSDNSDNSDNSDNSDNNR
QSGDQDNQKGSNEQNGQQDDNEGQQSDQSQANDEQQSGGDNSQQPDDSEMNSRNESSDSQ
QQNAEQEESDQGDSAQAQKDEQQAEQEAQAMQGQEAELTDAEKEELQRMESLMRRVPDDP
AFLLKRKMQLEAQKRQRQRMPSNRSDW