Protein Info for MIT1002_01196 in Alteromonas macleodii MIT1002

Annotation: Type III effector pipB2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 222 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF00805: Pentapeptide" amino acids 47 to 83 (37 residues), 44.3 bits, see alignment 1.5e-15 amino acids 80 to 119 (40 residues), 34.9 bits, see alignment 1.4e-12 amino acids 128 to 163 (36 residues), 35.9 bits, see alignment 6.5e-13 amino acids 156 to 192 (37 residues), 34.5 bits, see alignment 1.8e-12 amino acids 175 to 210 (36 residues), 32.5 bits, see alignment 7.3e-12 PF13599: Pentapeptide_4" amino acids 48 to 116 (69 residues), 41 bits, see alignment E=2.8e-14 amino acids 129 to 196 (68 residues), 37.3 bits, see alignment E=4e-13

Best Hits

KEGG orthology group: None (inferred from 44% identity to psa:PST_2272)

Predicted SEED Role

"pentapeptide repeat family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (222 amino acids)

>MIT1002_01196 Type III effector pipB2 (Alteromonas macleodii MIT1002)
MRLRFQATKQLPILLVVLYSATASAIPDFEDDVKIINGCEIKPKTVCSDTDLSGADLSHA
NLHGAVFTNVKFNKTDLRHANLSYATFKKSNLDHADLATANLKHADLRSSKVRNANLEGV
DGWALFGQGVDFTNSNFSGANLDQARLSGATMVNTNLRAARLERVWMNKANFEGASLINA
NIQEAKLNDASLYRANLTGTRIHYATFQGTFMDECINCPINW