Protein Info for MIT1002_01155 in Alteromonas macleodii MIT1002

Annotation: Outer membrane receptor for ferrienterochelin and colicins

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 982 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF17802: SpaA" amino acids 30 to 106 (77 residues), 29.9 bits, see alignment 2.1e-10 PF13620: CarboxypepD_reg" amino acids 30 to 112 (83 residues), 69.3 bits, see alignment E=1.2e-22 PF22904: NOMO1-like_2nd" amino acids 30 to 96 (67 residues), 32.2 bits, see alignment 4.1e-11 PF13715: CarbopepD_reg_2" amino acids 31 to 113 (83 residues), 32.8 bits, see alignment E=2.3e-11 PF07715: Plug" amino acids 132 to 232 (101 residues), 30.6 bits, see alignment E=1.7e-10 PF25183: OMP_b-brl_4" amino acids 333 to 567 (235 residues), 38.7 bits, see alignment E=1.8e-13 amino acids 572 to 846 (275 residues), 47.7 bits, see alignment E=3.4e-16 PF00593: TonB_dep_Rec_b-barrel" amino acids 380 to 929 (550 residues), 49.5 bits, see alignment E=2.6e-16

Best Hits

Predicted SEED Role

"Oar protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (982 amino acids)

>MIT1002_01155 Outer membrane receptor for ferrienterochelin and colicins (Alteromonas macleodii MIT1002)
MTFNKTLTAVAVAASMGLSAPVFAQESKGTITGTSVSASTEQALAGVEVTIVNLETGLTR
TIVTDSDGRYTFPLLPPGNYSLTAKKDGFSVAQEKQFSVRPSGKTNLDVALEAGDIERIS
VRGTSISNIDVTSSESQLYVDQEFISKVPVPRDISSVALLAPGTVSGDSDFGNYASFGGS
SVGENVYYVNGINVTNFRNGLGGSELPFEMYESFEVKTGGYSAEFGRSTGGVINARTKSG
SNEFKWGASAYYEPAALRAHQPDVFYRTQEDAEEAGTAYYVVNKEDETGETNVNLWASGA
LIEDKLFFFGLVNQKVRQRDYAETTTIYDREGNDTLLSAKLDWYITPEHILEFTAWDNTE
ELESEKFLYSPDSDNVGSSLGEYTLERGGTTWGAQYTGIITDDLTVSAQYSVNKTSYSNL
NNGANPLGDAPVIYDRFTNIEYGAYGLTTPSVQEDKRTAIRFDVEWYVNADHVLKIGIDN
EDLEAYENTSRAGGVAYRYENCGDNLDEPSNADCQVRQEFYVNQGDFETKSFAYYVEDTW
TVTDNITARIGLRNETFENFNKAGEKFVDVSDQWAPRLGLSWDVKGDGESKVFANYGRYY
LPVATNTNIRLAGDELYTRQYFDVESINDDFTPVLGEATGSLTVYSDGTLKGTTETVNAD
LDPMYQDEYILGYEQVINESWSFGIKGTYRDLKSSLEDIAIDAGFDDYIQQEFGSSCTLC
SGFHYYVLTNPGNDVTITTDPDGDGDVPYGTYTIPADMLGYPEAERQYAAVDLTVDRAWD
DIWMMSFTYTWSHSWGNTEGAVRSDNDQTDSGLTTNFDQPGLLDGAYGNLPNDRRHAVKL
TGAYQLFENFTLGANFRWTSGRPLNSFGYHPTDLFASYYDAESFVKDGELVSRGSEGRTP
STWTLDLSAKYLIELEQADVALRADIFNLFNNDDATQLNEINERYAGQSDEGIFLGEYNP
SYGLPTSFQTPRYVRFSVEVNF