Protein Info for MIT1002_01141 in Alteromonas macleodii MIT1002

Annotation: Dipeptide-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 586 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF00496: SBP_bac_5" amino acids 78 to 502 (425 residues), 290.8 bits, see alignment E=8.2e-91

Best Hits

KEGG orthology group: None (inferred from 87% identity to amc:MADE_02835)

Predicted SEED Role

"Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2)" in subsystem ABC transporter dipeptide (TC 3.A.1.5.2) or Bacterial Chemotaxis (TC 3.A.1.5.2)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (586 amino acids)

>MIT1002_01141 Dipeptide-binding protein (Alteromonas macleodii MIT1002)
MSHGLVKRLSLCICTALLVASCAKQNKQAFYNTGIIYCSESNPVTFNPQLDTSSTTSDAS
SHQLYDRLLDFDPESGRIVPSLASSWLVSDDGLTYAFQLRKDVWFHNTRYFTPTRNFNAD
DVIFSIDRWRLRSHPYHYVSGGRYPYFESIGLAQNIASVERVNGYRVEITLKRRDSSFLA
NLATDFAVILSEEYANQLAQTGTPGKIDELPVGTGPFKFDSYRKDHFIKFLRHDNYWRDQ
MEDAPTSDEVLSDNNTVESANQEVENGQGGEDTVQDGTAQNGDETRPVVEQLIFDITPRS
SLRLAKLMTGECDATAFPAQTELEVIRAKEDLTLAEKPGLNIGFWAFNTQRPPFDNPDVR
RALAAAIDKNTLLEAVYFDSATRAKTLLPAASWAFQNDADDTAYNPVLARKLLADAGVKA
GFSMTIWAMPVERSYNPNATKMAELIQRYLRDVGVEATIVSYDWTTFRRHLQEGLHDSVL
IGWSADNGDPDNFYRPLLSCGAIPSGTNRAMWCSEDYDKLLNDALQTDDIEERTAIYRQV
NRLLYERLPLVPIAHAYRYQAYRNELEGMTINPFGGVRFGGVKKAL