Protein Info for MIT1002_01118 in Alteromonas macleodii MIT1002

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 673 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 319 to 341 (23 residues), see Phobius details PF02743: dCache_1" amino acids 36 to 304 (269 residues), 76.6 bits, see alignment E=4.5e-25 PF22673: MCP-like_PDC_1" amino acids 116 to 206 (91 residues), 32.3 bits, see alignment E=2.4e-11 PF00672: HAMP" amino acids 343 to 392 (50 residues), 46 bits, see alignment 1e-15 PF00015: MCPsignal" amino acids 455 to 638 (184 residues), 147.3 bits, see alignment E=8.3e-47

Best Hits

KEGG orthology group: None (inferred from 75% identity to alt:ambt_13140)

Predicted SEED Role

"Methyl-accepting chemotaxis protein I (serine chemoreceptor protein)" in subsystem Bacterial Chemotaxis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (673 amino acids)

>MIT1002_01118 hypothetical protein (Alteromonas macleodii MIT1002)
MKSISLQKKFMLIVGGSIALMLLITAFFLVNTVADNTRSRVEKELKSLVAREANDVEGFF
ATYGGVARAFLSSPFLQDFFTRHNTRGAPESQLAQSKDIYATFEGISSQDPIIKSAFFGS
AKTGEYFYEEGRVGVDTSGPDAGNPNAGYFATKRPWFTTAVEKGKLYVTPPAVDSQDGSV
SAVVQTPIYKNGALLGVGGVDILISTVGKVIDAIRYEEQGTAFLLDENQNIVYFPKQSKA
LPLSSSIRNFDSVFDSTEGFGKLASNIAANESGIVHVTWKGEDYVAVFEHAQLTNPQMNW
SLGILIPASIIDSPINNAITTAIIVAFVIIGLIALITYFASAKVTQPLVEMRNAMAEIAH
GDGDLTKRLEVKSNDEIGALAIEFNTFTDKLRSLLKDTAANTKAVSDAADHLRDVSHATS
KEINQERSQVDNVSTAVTQMAATVVEISKNAAQSSDAATKADELVQAGSEQVQDAMREIR
ALADAISQGVEVVGGLSKESDSIGAVVDVINSIAEQTNLLALNAAIEAARAGEQGRGFAV
VADEVRSLASRTQESTTDIRKMVERLQAMSEQTNSVMQEGQTRSQSGVDKTEKVVETLKD
ITQSIGLVHEQSTHIALATEQQTEVAQDINKSLVAITGLSDKTSQHAEELAVEATQLSAV
SGDLKELVGQFKI