Protein Info for MIT1002_01086 in Alteromonas macleodii MIT1002

Annotation: Flagellar motor switch protein FliG

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 346 TIGR00207: flagellar motor switch protein FliG" amino acids 14 to 344 (331 residues), 333.3 bits, see alignment E=9.4e-104 PF14842: FliG_N" amino acids 17 to 118 (102 residues), 105.8 bits, see alignment E=3.3e-34 PF14841: FliG_M" amino acids 129 to 200 (72 residues), 94.1 bits, see alignment E=9.9e-31 PF01706: FliG_C" amino acids 231 to 337 (107 residues), 140.1 bits, see alignment E=6.3e-45

Best Hits

Swiss-Prot: 70% identical to FLIG_VIBCH: Flagellar motor switch protein FliG (fliG) from Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)

KEGG orthology group: K02410, flagellar motor switch protein FliG (inferred from 99% identity to amc:MADE_02888)

Predicted SEED Role

"Flagellar motor switch protein FliG" in subsystem Bacterial Chemotaxis or Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (346 amino acids)

>MIT1002_01086 Flagellar motor switch protein FliG (Alteromonas macleodii MIT1002)
MAEELANVDEPSYDVSKLEGVEKAAILLLSLSEEDAAQILKHLEPKQVQKLGTEMAKVDD
MTQTKITAVHKHFIEEIQNYSTIGFQSQDFVKRALTAALGEDKAANLIDQILMGSGAKGL
DSLKWMDSKQVASIIRNEHPQIQTIVLSYLEPEQSAEILAQFPEKVRLDLLMRIANLEEV
QPAALQELNEIMEKQFAGQAGTQAAKMGGLKSAANIMNYLDTAIEGQLMDAIREQDEEMS
QQIQDLMFVFDNLVDVDDKGIQAILREVQQDALLKAIKGADEELKDKIMRNMSKRAAEML
NDDLEALGPVRISEVETAQKEILSVARRLSDSGEIMLGGGGGEEFL