Protein Info for MIT1002_01085 in Alteromonas macleodii MIT1002

Annotation: Flagellar M-ring protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 564 transmembrane" amino acids 41 to 61 (21 residues), see Phobius details amino acids 453 to 474 (22 residues), see Phobius details TIGR00206: flagellar M-ring protein FliF" amino acids 35 to 563 (529 residues), 254.7 bits, see alignment E=1.2e-79 PF01514: YscJ_FliF" amino acids 62 to 234 (173 residues), 159.6 bits, see alignment E=7.7e-51 PF08345: YscJ_FliF_C" amino acids 267 to 434 (168 residues), 145.5 bits, see alignment E=1.7e-46

Best Hits

KEGG orthology group: K02409, flagellar M-ring protein FliF (inferred from 97% identity to amc:MADE_02889)

Predicted SEED Role

"Flagellar M-ring protein FliF" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (564 amino acids)

>MIT1002_01085 Flagellar M-ring protein (Alteromonas macleodii MIT1002)
MAEATGTNLTVPDQNQAVDNEPENKSGFMDTLGSADMMRQMALVVVLVICVAIAIFILIW
SQEPDYRPLAKMETQELIETLDYMDANQIDYKLEGNIVYVRSDEFQNIRLGMTRQGLTKA
SDAGTDIIMQDMGFGVSQRVEMERLKHAREQQIAATIEDIASIQKARVLLAMPKENVFAR
REKKASATVVLTAKRGAVIAGEEVDAVVDIVASAVQNMEPSKVTVTDSNGRLLNSGSQDS
MSARARKEYEIERQREQEYLEKIDAILIPVLGIGNYTAQADVTMDFTAMEQTQRSYNPDL
PAVRSEMIMEENSVGGGVGGIPGALSNQPPLDSNIPENAVGGTQQTMPGRTAKESTRNYE
LDTTISHTKKQTGVIRRLSVSVAVDYTQVAGEDGAMTPTPRKQEEILNIRRLLQGGIGFD
VTRGDSLEVVSVPFTRMDAGEIEDAPIWEQPGFLPILKLVVGGLVIIVLIIFVIRPMLRR
LINPDESNDADEFDADEGLDLGDDTISMLTSDFDEGQVGFAPDGSLMLPDLHKDEDVLKA
VRALVANEPELSAQVVKGWLMQDE