Protein Info for MIT1002_01012 in Alteromonas macleodii MIT1002

Annotation: Outer membrane protein assembly factor BamA precursor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 825 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details TIGR03303: outer membrane protein assembly complex, YaeT protein" amino acids 28 to 825 (798 residues), 868.3 bits, see alignment E=2.6e-265 PF07244: POTRA" amino acids 96 to 176 (81 residues), 43 bits, see alignment E=9.5e-15 amino acids 180 to 267 (88 residues), 55.1 bits, see alignment E=1.6e-18 amino acids 270 to 348 (79 residues), 57.7 bits, see alignment E=2.4e-19 amino acids 351 to 424 (74 residues), 48.2 bits, see alignment E=2.2e-16 PF01103: Omp85" amino acids 452 to 825 (374 residues), 277 bits, see alignment E=4.3e-86

Best Hits

KEGG orthology group: K07277, outer membrane protein (inferred from 99% identity to amc:MADE_01381)

Predicted SEED Role

"Outer membrane protein assembly factor YaeT precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (825 amino acids)

>MIT1002_01012 Outer membrane protein assembly factor BamA precursor (Alteromonas macleodii MIT1002)
MKLKQLVAAGAILSSASFANAAAQDSEFVVEDIRVEGLQRVALGAALTYLPVQVGDELNT
FRVTQLIRSLYSSTHFENVEILRDGNTLVVRVAERPTISNIIFEGNDDIKDEQLQESLDG
NGVRIGEPLDKTVLTSIENGLKDFFYSIGKYNADVTAIITPLPRNRVDLKLLFEEGDAAE
IEQINIVGNEIFSDEELMEAFELQYDTPWWDFLSETRYQQQTLQGDMETLRNHYLNRGYL
RFNVDSTQVSMTPEKSGIYIAMNVTEGEQYTISEVELVGDVLGHEEYIERVLPLTEGELY
NQAEVTYTEEFISKYLGRFGYAYPTVTTVPEINDEDKTVKLTLSVDPGKRIYVNRIKFNG
NVVTADSVLRQNVSQMEGTWLSNNLLESSKNQLSRLTYMEEVEYETVRIPGSEDKVDVNY
NVKEQPSGSFNAGIGYGDRTKLSLQAGIQQDNFLGTGKRVGLNLSTVSYQRSAQITYNDP
YFTIDGISLGGSLGYSEFDGSDFNVIQYNSKRWSIGANVGYPINEFNRINFGLTYSNVEL
YNRGYYEQTEQFYNQFTNGEDPDAAIKYDSYLASISWSRSTLNRGLFPTAGSSQRASFSI
TTPNSDVNYFKTVFDGKWYFPLSRNQRWSFLARVRLGYGNGYGDINGNEQILPFTENFTA
GGSDSLRGFENNTVGPRGVFLGNTGTIVGPDGEVFPGDPADAQLSWSTRSLGGNAMALGG
IELIVPTPFVEEEMDNSVRTSLFVDVGNVWDTEFDYDYYRQFDIASTQRGELLDYSDWSL
YRSSAGISVQWVSPMGPMVFSFSKAIQQRDGDDARFFTFNIGQTF