Protein Info for MIT1002_00989 in Alteromonas macleodii MIT1002

Annotation: SecY interacting protein Syd

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 180 PF07348: Syd" amino acids 7 to 178 (172 residues), 200 bits, see alignment E=1.2e-63

Best Hits

Swiss-Prot: 82% identical to SYDP_ALTMD: Protein Syd (syd) from Alteromonas mediterranea (strain DSM 17117 / CIP 110805 / LMG 28347 / Deep ecotype)

KEGG orthology group: None (inferred from 82% identity to amc:MADE_03044)

Predicted SEED Role

"Syd protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (180 amino acids)

>MIT1002_00989 SecY interacting protein Syd (Alteromonas macleodii MIT1002)
MALTISAQLDKFVSSYVEHTKGEGLKIVYDSEWPSPCYEKTAQDGGVVRWTPTLQSPPQS
FNNVEEALSLKLNPEYCEYFTRYYSDNLRAAAPQGRCELLQVFNSEDFERLQQNLIGHLL
MKQRLGQAPTLFFGLTDEEDFILTVVNESGEVALEQVGKEPSQILAPSLAAFLEQLTPTM