Protein Info for MIT1002_00972 in Alteromonas macleodii MIT1002

Annotation: Di-/tripeptide transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 506 transmembrane" amino acids 31 to 52 (22 residues), see Phobius details amino acids 59 to 79 (21 residues), see Phobius details amino acids 88 to 105 (18 residues), see Phobius details amino acids 111 to 129 (19 residues), see Phobius details amino acids 149 to 169 (21 residues), see Phobius details amino acids 175 to 195 (21 residues), see Phobius details amino acids 221 to 243 (23 residues), see Phobius details amino acids 249 to 270 (22 residues), see Phobius details amino acids 282 to 299 (18 residues), see Phobius details amino acids 336 to 359 (24 residues), see Phobius details amino acids 370 to 392 (23 residues), see Phobius details amino acids 404 to 427 (24 residues), see Phobius details amino acids 439 to 460 (22 residues), see Phobius details amino acids 472 to 492 (21 residues), see Phobius details TIGR00924: amino acid/peptide transporter (Peptide:H+ symporter)" amino acids 8 to 491 (484 residues), 376.8 bits, see alignment E=9.6e-117 PF07690: MFS_1" amino acids 30 to 296 (267 residues), 82.2 bits, see alignment E=3.6e-27 PF00854: PTR2" amino acids 87 to 459 (373 residues), 209.9 bits, see alignment E=6.2e-66

Best Hits

KEGG orthology group: K03305, proton-dependent oligopeptide transporter, POT family (inferred from 97% identity to amc:MADE_03062)

Predicted SEED Role

"Di/tripeptide permease YjdL"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (506 amino acids)

>MIT1002_00972 Di-/tripeptide transporter (Alteromonas macleodii MIT1002)
MKPSNDTSFFGHPGGLRTLFFTEMWERMSYYGMRALLVLFMTASLQTQGLGFTVATAGAI
YGLYTGAVYFLGLPGGWLADRLIGGKNAVWYGGIIIFAGHVVLAIDLQNLFFVGLILVAS
GTGLLKPNISAMVGQQYGDDDGRRDSGYALYYMGINIGSLIAYLVTGYLQENWGWHYAFG
AAAIGMAIGLIQYYFSNRSLSADSVAPANPYQGAAKQRAWMGVWAVIALAVVVIVLAHMG
TIVIEPVALAQQVAIVFTAIFFLYFGFIYFKGQLSDNEKKRMWALFLVCVASACFWSGFE
QAGSSLNLFAQNYTDRVLESGSLLTSWFGMDAIPTVWFQLSNSLFIIILSPFFAALWINL
AKRMIDPSYTIKCAVGIVIMASGFLVMFMASQYAAQGLKVAPMWLVTTYFLHTVGELCLS
PVALSAVSKLSPKRFAGQMMGVFVLTYSIGNIIAGLLSGNFDPENVEQMPDLYLQIALFS
IAIAIVIGLMSFKSRFWEKAGIEQKA