Protein Info for MIT1002_00889 in Alteromonas macleodii MIT1002

Annotation: General stress protein 17o

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 142 TIGR03561: peroxiredoxin, Ohr subfamily" amino acids 8 to 140 (133 residues), 185.4 bits, see alignment E=2.8e-59 PF02566: OsmC" amino acids 44 to 139 (96 residues), 68.8 bits, see alignment E=2.5e-23

Best Hits

Swiss-Prot: 64% identical to OHR_XANAC: Organic hydroperoxide resistance protein (ohr) from Xanthomonas axonopodis pv. citri (strain 306)

KEGG orthology group: None (inferred from 93% identity to amc:MADE_03141)

Predicted SEED Role

"Organic hydroperoxide resistance protein" in subsystem Oxidative stress

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (142 amino acids)

>MIT1002_00889 General stress protein 17o (Alteromonas macleodii MIT1002)
MHKLQQVVYTGSATATGGREGTVKSSDGKLDLKLSTPKELGGAGGEGTNPEQMFAAGYSA
CFIGALKHVAASQKIKLADDISVTGDVAIGPIEQGFAIAVKLTVDLGEMDKAQAQGLVET
AHQVCPYSNATRGNIEVDISLA