Protein Info for MIT1002_00824 in Alteromonas macleodii MIT1002

Annotation: glmZ(sRNA)-inactivating NTPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 281 PF03668: ATP_bind_2" amino acids 1 to 280 (280 residues), 357 bits, see alignment E=3.8e-111

Best Hits

Swiss-Prot: 100% identical to Y3196_ALTMD: Nucleotide-binding protein MADE_1004170 (MADE_1004170) from Alteromonas mediterranea (strain DSM 17117 / CIP 110805 / LMG 28347 / Deep ecotype)

KEGG orthology group: K06958, UPF0042 nucleotide-binding protein (inferred from 100% identity to amc:MADE_03196)

Predicted SEED Role

"Hypothetical ATP-binding protein UPF0042, contains P-loop"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (281 amino acids)

>MIT1002_00824 glmZ(sRNA)-inactivating NTPase (Alteromonas macleodii MIT1002)
MKLIIISGRSGSGKSVALRALEDLGYYCVDNIPVNLLPTLTHTVVDEYDQVAVSIDVRNL
PKNPDDLVEILDYLPSSWSMTIVYIDASDDVLVKRFSETRRLHPLAKLNKSLSEAIKAES
ALLAPIAERADLYLDTDKLTIHQLAELIRERILGKKSSRLVLVFESFGFKHGIPKDADYV
FDARFLPNPHWEPDLKHLTGLDAPVEVFLGSQPVVTKFIWQIQNLITTWLPHLERNNRSY
VTVAIGCTGGQHRSVYIAQTLSKTFSEIHPDVQIRHRELNQ