Protein Info for MIT1002_00746 in Alteromonas macleodii MIT1002

Annotation: HDOD domain protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 278 transmembrane" amino acids 118 to 136 (19 residues), see Phobius details PF08668: HDOD" amino acids 22 to 208 (187 residues), 114.9 bits, see alignment E=1.7e-37

Best Hits

KEGG orthology group: None (inferred from 93% identity to amc:MADE_03445)

Predicted SEED Role

"FIG00951002: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (278 amino acids)

>MIT1002_00746 HDOD domain protein (Alteromonas macleodii MIT1002)
MSTQNALSTILVEKINNDTLVLPTLPAIALKVRKAADDPDINLNAMGDVIGQDPSLSARM
IKIANSAYMGRSVKVTSISQAVTRIGLRQIKNISTALAMEQLFVSKNDVVARYLQQEWAN
TVNIVANSMAVLQLYIARTKKREMSMDTMTLAALVHNIGVLPILTEAERHPEVFANPSFL
EVAIDKLAGRIGASIMTEWGFGETFVNVSKNWKDLSYMPEELTYIDFVRVGAAVSGAVDS
QKDAILNLAIQRGVVEDMGELHSGEFEELASAAKQIFL