Protein Info for MIT1002_00663 in Alteromonas macleodii MIT1002

Annotation: cytochrome c oxidase accessory protein CcoG

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 457 transmembrane" amino acids 37 to 55 (19 residues), see Phobius details amino acids 76 to 98 (23 residues), see Phobius details amino acids 156 to 173 (18 residues), see Phobius details amino acids 185 to 206 (22 residues), see Phobius details amino acids 323 to 342 (20 residues), see Phobius details TIGR02745: cytochrome c oxidase accessory protein CcoG" amino acids 31 to 439 (409 residues), 467.6 bits, see alignment E=2.1e-144 PF12801: Fer4_5" amino acids 85 to 126 (42 residues), 22.3 bits, see alignment 4.2e-08 PF13746: Fer4_18" amino acids 209 to 312 (104 residues), 131 bits, see alignment E=9.8e-42 PF13534: Fer4_17" amino acids 213 to 275 (63 residues), 22.8 bits, see alignment E=4.3e-08 PF13187: Fer4_9" amino acids 213 to 273 (61 residues), 27 bits, see alignment E=1.5e-09 PF11614: FixG_C" amino acids 343 to 442 (100 residues), 72.8 bits, see alignment E=1.1e-23

Best Hits

KEGG orthology group: None (inferred from 53% identity to pha:PSHAa1892)

Predicted SEED Role

"Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation" in subsystem Biogenesis of cbb3-type cytochrome c oxidases or Terminal cytochrome C oxidases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (457 amino acids)

>MIT1002_00663 cytochrome c oxidase accessory protein CcoG (Alteromonas macleodii MIT1002)
MTAVKIRQEDIIACTPVENKKIYIREETGHFQKIRRYLNVVLVTLFVVLPFIQYQGQQAI
LFDVGRQTLTLFAWVLYPQDLMIFAFLFILAAFVLFLVTRHYGRVWCGFTCPQTVWTLAF
NWVERRIEGTHNQSKALDKQPSSLTKVVVKGAKHSAWLALSLVTALVFMSYFYPASRLYT
EFFTFSAPALISGWTMFFAVCTYANAGWLREKMCTHMCPYSRFQAAMFDNSTSLVTYNET
RGESRGPRKRFSQHKDLGDCVDCNLCVQVCPAGIDIREGIQYECINCGLCIDACDKVMAK
FGYPLKLINFSRAGRNSGRKFTNYLYGAAIIAILLAMGEWAIDRQEFEASISRDRNALYR
ENNAGHIENTYTLTVLNKSRVAKTYEIAIETPSDMQLINVPTINVAPGEKRNVPFSVEAL
SPMANTMQSVSFVIIDKSTNSVIGNEVMFYSGNNRQM