Protein Info for MIT1002_00597 in Alteromonas macleodii MIT1002

Annotation: Site-specific recombinase XerD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

No protein families (PFam or TIGRFam), signal peptides, or transmembrane helices were found in this protein.

Best Hits

KEGG orthology group: None (inferred from 54% identity to sec:SC140)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Find the best match in UniProt

Protein Sequence (513 amino acids)

>MIT1002_00597 Site-specific recombinase XerD (Alteromonas macleodii MIT1002)
MEKLNYEIVGVEVQPFTYRHPLIVVNEDGEVQISYSQKRDDAIHIKRITFLSMVGRDANG
HIKLYKPIEHVNRFLMAHHIDDGREESSQYSKALIHFFSFLTALQEKWDAENDGDLFDEV
LGLQRPSWNYMAPRKAHRITYQYRAALKYSVINESDKNLRLARTTASAYMNAVVKFYSYH
IRQGHKFNNPPFEHETYTIHFEAPLNSMKSYMTKAVQTTDLRLNFPKSKRNEGGVIPEAR
RDLAPLTNKQWLEVENIILNTRKVLKNVNGQKKLTRLAEEYCLLFLVIRYSGLRKEEAAS
LHCGQVVKPNLEQPIMRLGIGCEYGSLTKSKSGTNKSRKTIIPCSTMQMLYEYSCSQRYL
KRLEKFRALCQNKRESGDVAFFESIDGVDENKDYLFISNSGIPFFLKLNELNNRWNEVRS
TVEEVLGQKVNGSIHNLRSTFAVAIFRALLRKVSSDIALAIVSDLLGHEDIKTTMLYLKI
AENAPTGDEIYEDVLDFVGVFDELEALDDKLYP