Protein Info for MIT1002_00417 in Alteromonas macleodii MIT1002

Annotation: Ammonia transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 415 transmembrane" amino acids 14 to 38 (25 residues), see Phobius details amino acids 50 to 70 (21 residues), see Phobius details amino acids 103 to 122 (20 residues), see Phobius details amino acids 128 to 149 (22 residues), see Phobius details amino acids 170 to 191 (22 residues), see Phobius details amino acids 205 to 227 (23 residues), see Phobius details amino acids 245 to 267 (23 residues), see Phobius details amino acids 276 to 293 (18 residues), see Phobius details amino acids 301 to 320 (20 residues), see Phobius details amino acids 329 to 348 (20 residues), see Phobius details amino acids 358 to 380 (23 residues), see Phobius details TIGR03644: probable ammonium transporter, marine subtype" amino acids 9 to 410 (402 residues), 664.2 bits, see alignment E=3.1e-204 PF00909: Ammonium_transp" amino acids 16 to 407 (392 residues), 325.6 bits, see alignment E=2e-101

Best Hits

KEGG orthology group: None (inferred from 99% identity to amc:MADE_00480)

Predicted SEED Role

"Ammonium transporter" in subsystem Ammonia assimilation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (415 amino acids)

>MIT1002_00417 Ammonia transporter (Alteromonas macleodii MIT1002)
MEITFELGYALDTFYFLICGALVMWMAAGFAMLEAGLVRAKNTTEILTKNVALFAIACTM
YMICGYGIMYGGGDWGPFLSGIMADGATGVAEEPATYAPSADFFFQVVFVATAMSIVSGA
VAERMKLWAFLAFAVVMTGFIYPMEGAWTWGGEAVFGMYTLGDLGFSDFAGSGIVHMAGA
AAALAGVLVLGARKGKYTADGKVNAIPGANLPLATLGTFILWMGWFGFNGGSVLATATVE
SANSVAIVFMNTNAAAAGGAIAALIVARILFGKADLTMVLNGALAGLVAITAEPSTPTPL
QATLFGGLGGILVVLSIVALDKLKIDDPVGAISVHGVVGLLGLILVPFTNDGSSISGQLI
GAATIFVWVFVVSLVVWLVIKAVMGVRVSEEEEFDGVDMSECGLEAYPDFTSSRS