Protein Info for MIT1002_00366 in Alteromonas macleodii MIT1002

Annotation: Putative nucleoside transporter YegT

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 405 transmembrane" amino acids 7 to 28 (22 residues), see Phobius details amino acids 40 to 61 (22 residues), see Phobius details amino acids 70 to 88 (19 residues), see Phobius details amino acids 94 to 118 (25 residues), see Phobius details amino acids 130 to 149 (20 residues), see Phobius details amino acids 163 to 183 (21 residues), see Phobius details amino acids 214 to 232 (19 residues), see Phobius details amino acids 252 to 269 (18 residues), see Phobius details amino acids 276 to 295 (20 residues), see Phobius details amino acids 301 to 320 (20 residues), see Phobius details amino acids 341 to 361 (21 residues), see Phobius details amino acids 377 to 396 (20 residues), see Phobius details PF03825: Nuc_H_symport" amino acids 2 to 399 (398 residues), 411.3 bits, see alignment E=9.2e-127 PF12832: MFS_1_like" amino acids 4 to 366 (363 residues), 113.3 bits, see alignment E=2.8e-36 PF01306: LacY_symp" amino acids 6 to 395 (390 residues), 42.8 bits, see alignment E=6.3e-15 PF07690: MFS_1" amino acids 6 to 267 (262 residues), 33.8 bits, see alignment E=3.6e-12 amino acids 252 to 401 (150 residues), 49.4 bits, see alignment E=6.7e-17

Best Hits

KEGG orthology group: None (inferred from 99% identity to amc:MADE_00432)

Predicted SEED Role

"Putative nucleoside transporter YegT"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (405 amino acids)

>MIT1002_00366 Putative nucleoside transporter YegT (Alteromonas macleodii MIT1002)
MITLRLSLMMFLQFFIWGGWFVTLGTYLSNTLSANGGQIGMAFSTQSWGAIIAPFIVGLI
ADRFFNAEKILGLLHIVGAVLMYCMYQANDFASFYPYVLAYMIAYMPTLALVNSVSFGQM
VDPSKEFGKVRVWGTIGWIVAGLMISYVFSWDSAQSIADGMLKNTFLLCSVASLMLGVFS
FTLPNTPPQSGGKAVTIRDILGLDALALLKDKNFFVFFLSSVLICIPLAFYYQNANPFLT
EIGVENATGKMTLGQVSEVLFMLALPVFLNRFGIKATLVIGMAAWVVRYALFAFGNADEG
LFMLIVGIALHGICYDFFFVSGQIYTNAKAGENVKSAAQGLITLATYGVGMLVGFAVAGA
ITDTYTMETGAHSWQQVWLFPAGFAAVVLVLFAILFRKEKVDADA