Protein Info for MIT1002_00261 in Alteromonas macleodii MIT1002

Annotation: putative FAD-linked oxidoreductase YvdP

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 704 PF00106: adh_short" amino acids 5 to 193 (189 residues), 82.8 bits, see alignment E=4.7e-27 PF13561: adh_short_C2" amino acids 11 to 234 (224 residues), 53 bits, see alignment E=7.3e-18 PF01565: FAD_binding_4" amino acids 302 to 436 (135 residues), 101 bits, see alignment E=9.5e-33 PF08031: BBE" amino acids 674 to 698 (25 residues), 20.8 bits, see alignment (E = 6.5e-08)

Best Hits

KEGG orthology group: None (inferred from 97% identity to amc:MADE_00332)

Predicted SEED Role

"probable oxidoreductase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (704 amino acids)

>MIT1002_00261 putative FAD-linked oxidoreductase YvdP (Alteromonas macleodii MIT1002)
MLYQQTAIISGASSGIGLALTKELLLSYPFIQIVALCRNPETLQQLKRSYGDRVRIECID
FTNRDCIKSLQNVVNQHTHFSYLIHCAGVVMPFGDISNVAPDEWEATQWINVEVPRLLTQ
ICLKKFSHSRVMFLTSDLPVQPVAGASAYCVSKASLNMLCQCFQLEVDNDIAVFTTVAPG
NVDTKMQETIRQASNHALPASELMRSMYSANKLLPPRLVAQYLRQLLSDITPNTFGSRSW
NLLESIVEVSPAKQTKTDSITRATETSLVELASLVDGAFWSPGSAEYEENRKVFNQGVSR
FPLVIIQPKTKTDIIHIVRCAKQLRLSITIKGQGHGVSGMSVLNNAIVIDMSMFKTTVLN
VDKSSVNVGAGVKNSELDHFLAQHNKVVPLGTCPDVGVVGATLGGGIGFLSRKLGLSCDN
VLAFGLITADGKVRQVTESQHPDLFWALKGCGHGQFGVVTDVTFKLNDAPQNIDGRILEW
PLCHARSILRQYSKTVLSDNRSVFLYAYLSRSMHDKARISIMGFSEDWVHGLDSVAKWQD
GATLLSRRSQYVECQSNDYDSDLSLYWRNGIIEGELSDEFIETLLSCYRACPVNSGGFML
DPLCGAIQDVNADDSAFIHRNASFVCSITGITQAECDDTEVIDWVNKSFDLLLPFFNGHS
YQNYDMGNGSPLALYYGQHTARLKLLKQQYDPTGLFMSSLLRPD