Protein Info for MIT1002_00225 in Alteromonas macleodii MIT1002

Annotation: putative protein involved in outer membrane biogenesis

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1331 signal peptide" amino acids 1 to 35 (35 residues), see Phobius details TIGR02099: TIGR02099 family protein" amino acids 11 to 1296 (1286 residues), 810.6 bits, see alignment E=1.2e-247 PF13116: YhdP" amino acids 11 to 1287 (1277 residues), 867.8 bits, see alignment E=8.4e-265

Best Hits

Predicted SEED Role

"FIG005080: Possible exported protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1331 amino acids)

>MIT1002_00225 putative protein involved in outer membrane biogenesis (Alteromonas macleodii MIT1002)
MTNFSSVAAYLLKKFWLLLAVLLVLFALVLSAARYALPHIEHNKHLLENYINEQYGVNLS
IQSVHAVWQRNGPSIVLNSVSLAKNDASPVALDIRQIYVELDFWESLRHQLISSTRFELR
GLKLDIDADRLSGGDKNNFPVVNALERLFLEQLQSFSLEDGVVSVTHLNETNSFDIESLS
WNNHEERHQGLGQLKVADLAANSASFIIDITGTREDFDGVFYAKAEELDISPWVSDLIKT
KRPLAQSRANFEVWTNFSQSEVTSVQAELSESLLEWGSGRAKTVTGIRGGSLQALPNDEN
RQGGWNVRVDQLVLNSSNETLTTDLIGSISANGDALINTVKPVQINPFLLLLPLFMDDTS
EEEIRGLNPKGELATLQIQWHNGQPSLAAKVLDLQWDKTDKVPGLSSLDADFFWYKNNGA
IYLESADSLLSANGVIKKDVNIKLFKSQFYIYPEQIDSEDKQWVVKGSDMLFDSDAVTLR
PQFKLNTSTGFMSLYVDVSPLALNEVSSLFPSSLMGTNTDKYLTRAFTGEGEIANARVLW
HGRTSDFPFDDNTGIFQAYVDIEQGDFLFAPDWPALNNLDLSLYFVNNALVMESPSATLA
GMKISDMSAAIPSFSPDARLIIYANGTGTGDALTALMMDSSLKKSLGKVLNEDVQIGGPL
TADIKLDIPFKGKDVVASGTAHLSNNPVFVATTNMLFDKASGEVSFVNGDIDASGLQAQF
LKQPVNLSLSGRQGDTYDLNVELGGRWHVHPLANYVNTDLTEYIDGESDWNTTVQLSLSN
SGFNYTANLTADLTATQSVLPAPFDTPAGSSLPLLITSKGDSKASNVEASLGDNIRFDGV
LPHKEMQFSRAHLALGESDIANIGTGFSISANLAQADVQEWFTTINMLLSGKGKDTSTAV
AKANAHSSIQSNESKKANLFGTPSRIFAKADKLNFAGHSIKDAQLSATERNKDWILDLAS
PQARATIRINSDLDEQGIEINADYLSLEKPVEAGGTTKADSESGVELATNSAMPNEEGES
PYNIDPNTLPPIYFYCQSCGVHGIDLGEITLDIAKEENGLAIRQLLVKSDETNVTATGYW
KHMGGEIQSALNGTLTSPDVGQMLKEYGVESGIKDSSANVAFDITWPNAPMDFGFEQLNG
NVQWSLSDGYLTELSDKGSRIFTLFSLNSLVRKLSLDFRDVFAKGFFYDDMGGTLSIVDG
KAYTDDTEIDGGAGEIEITGFTDLNTGGLNYNVSFAPNVTGNLPFLVYFLATPPTALAAL
AIDQVLTSAKVISNVNYRVTGTIKDPKFDEVERNSKDISLPAQNAPVPANPQDRPLTEDD
VRRLKMEVIDG