Protein Info for MIT1002_00210 in Alteromonas macleodii MIT1002

Annotation: Type II traffic warden ATPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 570 PF05157: MshEN" amino acids 42 to 147 (106 residues), 84 bits, see alignment E=8.4e-28 PF00437: T2SSE" amino acids 188 to 453 (266 residues), 318 bits, see alignment E=4.5e-99

Best Hits

KEGG orthology group: K12276, MSHA biogenesis protein MshE (inferred from 96% identity to amc:MADE_00254)

Predicted SEED Role

"MSHA biogenesis protein MshE" in subsystem Mannose-sensitive hemagglutinin type 4 pilus

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (570 amino acids)

>MIT1002_00210 Type II traffic warden ATPase (Alteromonas macleodii MIT1002)
MRPRLKMRLGDLLVHENIISSEQLDNALAAQRTSGRKLGDTLIDLGFIGEPQLLRFLAQQ
LNIPFLDITQRRIDPEQAQLIPETYARRYRALVLEADDDEVLLGMSDPTDLGGLDQLGPL
VAPRTIELAIVQENQMLEAFDSVYRRTQDIASFAEKLGEEYADEADFELSALDDTTSDAT
VVKLLHSIFEDAVQVRASDIHIEPDEKILRIRQRVDGVLQENTLNQVKIASALVLRLKLM
SGLDISEKRIPQDGRFNIKVKGHTLDVRVSTMPVANGEAVVMRLLDQSAGLLTLDQTGMP
DAMAEKFRAAINRPHGMILVTGPTGSGKTTTLYGALSELNKPDLKIITAEDPIEYRLPRI
NQVQVNAKIGLDFAAILRTTLRQDPDIIMVGEMRDQETVEIGLRGALTGHLVLSTLHTND
SVTSAIRLIDMGAAPYLVATSLRGVLAQRLVRRVCENCKEEKPATAQEQAWAGFLKPELA
TATFYKGRGCNSCNHTGYKGRIGVFEFLEMNEDMMEALREDDTQGFVDATKANKDFVPLS
HMALDYAAQGKTSLDEVFKVAEFVPEVVNH