Protein Info for MIT1002_00091 in Alteromonas macleodii MIT1002

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 408 transmembrane" amino acids 120 to 138 (19 residues), see Phobius details amino acids 144 to 161 (18 residues), see Phobius details amino acids 169 to 190 (22 residues), see Phobius details amino acids 196 to 218 (23 residues), see Phobius details amino acids 239 to 258 (20 residues), see Phobius details amino acids 269 to 288 (20 residues), see Phobius details amino acids 295 to 313 (19 residues), see Phobius details amino acids 319 to 337 (19 residues), see Phobius details amino acids 344 to 364 (21 residues), see Phobius details amino acids 384 to 402 (19 residues), see Phobius details PF06738: ThrE" amino acids 11 to 252 (242 residues), 197.9 bits, see alignment E=1.9e-62 PF12821: ThrE_2" amino acids 275 to 400 (126 residues), 48.4 bits, see alignment E=1.1e-16

Best Hits

KEGG orthology group: None (inferred from 96% identity to amc:MADE_00140)

Predicted SEED Role

"Protein of unknown function DUF1212"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (408 amino acids)

>MIT1002_00091 hypothetical protein (Alteromonas macleodii MIT1002)
MDTVEFIQIRRFIVKLGKMLHKYGTPAFRLEAYLGEVAKYLGVHASFISTPTSLTFVIWS
DRHEDEYNHAARLLPGELDMNALSLTDELASELLSGKLTLSEADKRLNEIDAMGSPYGKW
VTGVAFAMATGAFAMLMGASWSEIGWSGALGIVAYLWTLWAQQSKRVNLMLEPVTAFVGG
ILACAIGQYVDPGINIPLVVLSSVIVFVPGLALTMGLAELSSRNMVSGTARTMDAIMQLF
KLYFGAFLGVSVGFSAFGENVYTPAESLPYWATWLAVFLLCIALVAIFRTRIKHIPWALA
AAFIAYSATAWSSDYMSPGLGAFVGAFALGIFANAFTRIANQPATIVAMHGLIVLVPGSK
TYIGLNSFMTGQDFVKADHLGQEVFLIFMSLVAGLIFANVVVPTKKAL