Protein Info for MCAODC_27955 in Escherichia coli ECRC101

Name: fbpB
Annotation: iron ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 692 transmembrane" amino acids 16 to 35 (20 residues), see Phobius details amino acids 53 to 74 (22 residues), see Phobius details amino acids 86 to 105 (20 residues), see Phobius details amino acids 111 to 130 (20 residues), see Phobius details amino acids 141 to 168 (28 residues), see Phobius details amino acids 189 to 217 (29 residues), see Phobius details amino acids 229 to 253 (25 residues), see Phobius details amino acids 273 to 296 (24 residues), see Phobius details amino acids 324 to 346 (23 residues), see Phobius details amino acids 380 to 402 (23 residues), see Phobius details amino acids 422 to 448 (27 residues), see Phobius details amino acids 488 to 510 (23 residues), see Phobius details amino acids 522 to 542 (21 residues), see Phobius details amino acids 548 to 566 (19 residues), see Phobius details amino acids 610 to 633 (24 residues), see Phobius details amino acids 653 to 678 (26 residues), see Phobius details PF00528: BPD_transp_1" amino acids 211 to 399 (189 residues), 52.7 bits, see alignment E=2.3e-18 amino acids 500 to 677 (178 residues), 40.8 bits, see alignment E=1e-14

Best Hits

Swiss-Prot: 68% identical to FBPB_ACTPL: Ferric transport system permease protein FbpB (fbpB) from Actinobacillus pleuropneumoniae

KEGG orthology group: K02011, iron(III) transport system permease protein (inferred from 100% identity to ece:Z0459)

Predicted SEED Role

"Ferric iron ABC transporter, permease protein" in subsystem Campylobacter Iron Metabolism or Iron acquisition in Vibrio or Transport of Iron

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (692 amino acids)

>MCAODC_27955 iron ABC transporter permease (Escherichia coli ECRC101)
MSQTLALHPVKKRDAIFLWVLLGWLAFVLLPSWSLDYGLLESTSDEILGAYGWSHFNISW
LWYLLPSLLLVRPFRQATREQRSRHYFDAGWALLCMAFIVISATVAGRGLGYAAIVLFVE
LGAIMTLALTRLEWLGGDRFVIGSLIAIVALIGIFIVWPSIAIFIPMFTNDAGELAPLAF
MTVLSQAHIVQVIVNSIVLSIAVGIGCAFFGLVLAIYTTRIAKRSAIIGRIFSILPIVTP
PFVVGLGVTLMMGRSGYVTEFMVEWFGLTNTNWLYGFTGIWLAQVLAFTPMAFMILDGAI
KTIHPSLEEASYTLRASRWQTFNGVFVPLLKPALANAFLIVVVQSLADFSNPLVLGGNFD
VLATQIYFYITGSQLDYQAASTLGAFLLLFSLLVFCIQYMWIGKRSYVTVSGKSYRGDVQ
PLPVTLVWSVVAILAIWIAFNALLYGSIFYGSFTVNWGVDYTLTLDNFIKLFGQGMSDGA
WPSLLDTLLYAGIAAPITAIFGLLIAWVVVRQQFKGKKTIEFTTMLCFAVPGTVAGVSYI
LAFNSAPVYLTGTAAIVIISMVMRNVPVGIRAGIAGLGQIDKSLDEASLSLRAGSLRTIT
HILLPLLRPAILSALIYSFVRAITTVSAIVFLVTPDTRVATAYILNRVEDGEYGVAIAYG
SILIVVMLAIIFLFDWLIGEARISRSKAKNQA