Protein Info for MCAODC_22405 in Escherichia coli ECRC101

Name: ssb
Annotation: single-stranded DNA-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 136 TIGR00621: single-stranded DNA-binding protein" amino acids 5 to 120 (116 residues), 54.2 bits, see alignment E=1.1e-18 PF00436: SSB" amino acids 5 to 99 (95 residues), 57.8 bits, see alignment E=5e-20

Best Hits

KEGG orthology group: None (inferred from 99% identity to sbo:SBO_2128)

Predicted SEED Role

"Putative single stranded DNA-binding protein of prophage"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (136 amino acids)

>MCAODC_22405 single-stranded DNA-binding protein (Escherichia coli ECRC101)
MTAQIAAYGRLVDDPQVKQTSKGTPMTLARMAVSLPCSQAQDGQATLWLSVIAFGKQAGF
LAKHQKGDVASVSGTMQVSQWTGQNGETRQGWQVIADSVISARAARPGGNRRKTTGTQGN
QPPAGGDDPYGDDISF