Protein Info for MCAODC_17610 in Escherichia coli ECRC101

Name: ynfA
Annotation: YnfA family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 108 transmembrane" amino acids 6 to 26 (21 residues), see Phobius details amino acids 32 to 52 (21 residues), see Phobius details amino acids 59 to 78 (20 residues), see Phobius details amino acids 85 to 106 (22 residues), see Phobius details PF02694: UPF0060" amino acids 1 to 107 (107 residues), 161.5 bits, see alignment E=3.5e-52

Best Hits

Swiss-Prot: 100% identical to YNFA_ECO57: UPF0060 membrane protein YnfA (ynfA) from Escherichia coli O157:H7

KEGG orthology group: K09771, hypothetical protein (inferred from 98% identity to eco:b1582)

Predicted SEED Role

"Protein of unknown function UPF0060"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (108 amino acids)

>MCAODC_17610 YnfA family protein (Escherichia coli ECRC101)
MIKTTLLFFATALCEIIGCFLPWLWLKRNASIWLLLPAGISLALFVWLLTLHPAASGRVY
AAYGGVYVCTALMWLRVVDGVKLTLYDWTGPLIALCGMLIIVVGWGRT