Protein Info for MCAODC_17000 in Escherichia coli ECRC101

Annotation: phage tail tape measure protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1080 transmembrane" amino acids 411 to 433 (23 residues), see Phobius details PF20155: TMP_3" amino acids 84 to 272 (189 residues), 198.8 bits, see alignment E=1.2e-62 TIGR02675: tape measure domain" amino acids 157 to 231 (75 residues), 80.6 bits, see alignment 8.2e-27 PF06120: Phage_HK97_TLTM" amino acids 395 to 686 (292 residues), 296 bits, see alignment E=4.4e-92 TIGR01541: phage tail tape measure protein, lambda family" amino acids 725 to 1043 (319 residues), 240.8 bits, see alignment E=2.1e-75 PF09718: Tape_meas_lam_C" amino acids 862 to 933 (72 residues), 65.2 bits, see alignment 6.8e-22

Best Hits

KEGG orthology group: None (inferred from 100% identity to ecf:ECH74115_1549)

Predicted SEED Role

"Phage tail length tape-measure protein 1"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1080 amino acids)

>MCAODC_17000 phage tail tape measure protein (Escherichia coli ECRC101)
MATLRELIIKISANSQSFQSEIQRASRMGSEYYRTLQNGGRQAAAAAREQRRALAELNSQ
LTEIRGSAVGMAGAFAGAFASGHLISLADEWSSVNARLKQASQSSDEFSSSQKVLMDISQ
RTGTAFSDNAALFARSAASMREYGYSAGDVLKVTEAISTGLKISGASTAEAGSVITQFSQ
ALAQGVLRGEEFNSVNESGDRIVRALAAGMGVARKDLKAMADDGKLTADKVVPALISQLG
ILRDEYAAMPETVSSSITKVENAFMAWVGGANEASGVTKTLSGMLNGVAGQIDNVATAVG
ALVAVGVARYFGNMASGAMSATAGLVTAARNEVALAEAQFRGTQIATARARAAVYRAQQA
VAAARGTEMQIAAEARLAATQERLNRNIAARTAAQNALNSTTAVGSRLMSGALGLVGGVP
GLVMLGAAAWYTLYQNQEQARESARQYALTIDEIAHKTPSMSLPEASDNEGRTRAALTEQ
NRLIDEQASRVKSLQEKIAGYQYVLANPGWTTGDGFMINHLTSVKTVTEGLAQATEQLAV
EQSRLAQMQEKAQSIQDVLAGLEDRRVALIRQQAAEQNKVYQSMLVMNGQYTEFNRLLGL
GNELLQQRQGLVNVPLRLLQATLDDKQQSALTKTERELALSRLKGEEKERVRLGYAADDL
GFVGDPYQEARQRYISNALEAWRNNEVNKPKSRGGKSETEKAEDSFSRLLKQQKEQLALV
GQNTELAKLKYQTALGELKTLTEMQKQELLRNATLIDQQKIREQLRSREETLKNENAAAR
ASNDAELLGYGQGERARERMRELQQIRDSFRQKDADLQSQYQTGDISEDFYRQALAQNAQ
YLSERLKDQAVFYAESDVQRADWQKGLQEGFSNWVDNASDYASQAAQLATEGISGMVNNI
TEMLNGNKVEWRSWASSVLQEISKVLMNAAIVNGIKTAANGMSGAGGFLGSIGDWLGGAV
ANAKGGVYTSANLSAYSNSIVDTPTYFAFAKGAGLMGEAGPEAIMPLTRAADGSLGVRAV
GSMNGSAGLVYSPVYHIAIQNDGANGQIGPEAAGSLVQLIDQRVQAVMLSMRRDGGMLSG