Protein Info for MCAODC_15645 in Escherichia coli ECRC101

Name: yciK
Annotation: YciK family oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 252 PF00106: adh_short" amino acids 14 to 209 (196 residues), 187.4 bits, see alignment E=5.3e-59 PF02719: Polysacc_synt_2" amino acids 15 to 183 (169 residues), 23.2 bits, see alignment E=9.3e-09 PF08659: KR" amino acids 15 to 181 (167 residues), 56 bits, see alignment E=1.2e-18 PF01370: Epimerase" amino acids 15 to 193 (179 residues), 21.2 bits, see alignment E=4.4e-08 PF13561: adh_short_C2" amino acids 19 to 239 (221 residues), 124 bits, see alignment E=1.9e-39

Best Hits

Swiss-Prot: 99% identical to YCIK_ECOLI: Uncharacterized oxidoreductase YciK (yciK) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 99% identity to eco:b1271)

Predicted SEED Role

"YciK-like oxidoreductase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (252 amino acids)

>MCAODC_15645 YciK family oxidoreductase (Escherichia coli ECRC101)
MHYQPKQDLLNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEET
GRQPQWFILDLLTCRSEDCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDV
IQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQGRANWGAYAASKFATEGMMQVLA
DEYQQRLRVNCINPGGTRTAMRASAFPTEDPQKLKTPADIMPLYLWLMGDDSRRKTGMTF
DAQPGRKPGISQ