Protein Info for MCAODC_08965 in Escherichia coli ECRC101

Name: yhaJ
Annotation: DNA-binding transcriptional regulator YhaJ

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 298 PF00126: HTH_1" amino acids 9 to 68 (60 residues), 60.8 bits, see alignment E=9.7e-21 PF03466: LysR_substrate" amino acids 94 to 287 (194 residues), 69.6 bits, see alignment E=2.6e-23

Best Hits

Swiss-Prot: 100% identical to YHAJ_ECOLI: Probable HTH-type transcriptional regulator YhaJ (yhaJ) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 100% identity to eco:b3105)

Predicted SEED Role

"LysR-family transcriptional regulator YhaJ"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (298 amino acids)

>MCAODC_08965 DNA-binding transcriptional regulator YhaJ (Escherichia coli ECRC101)
MAKERALTLEALRVMDAIDRRGSFAAAADELGRVPSALSYTMQKLEEELDVVLFDRSGHR
TKFTNVGRMLLERGRVLLEAADKLTTDAEALARGWETHLTIVTEALVPTPAFFPLIDKLA
AKANTQLAIITEVLAGAWERLEQGRADIVIAPDMHFRSSSEINSRKLYTLMNVYVAAPDH
PIHQEPEPLSEVTRVKYRGIAVADTARERPVLTVQLLDKQPRLTVSTIEDKRQALLAGLG
VATMPYPMVEKDIAEGRLRVVSPESTSEIDIIMAWRRDSMGEAKSWCLREIPKLFNGK