Protein Info for MCAODC_05885 in Escherichia coli ECRC101

Name: escQ
Annotation: type III secretion system LEE ring protein EscQ

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 305 PF06622: SepQ" amino acids 1 to 305 (305 residues), 657.4 bits, see alignment E=1.4e-202

Best Hits

KEGG orthology group: K03225, type III secretion protein SctQ (inferred from 100% identity to eok:G2583_4420)

Predicted SEED Role

"SepQ"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (305 amino acids)

>MCAODC_05885 type III secretion system LEE ring protein EscQ (Escherichia coli ECRC101)
MKPLSSQLNMKINDFYLPLLPVIGTGRLYITSKGHACHAYFREVSGHGIRFTLTYSGYEG
RFWISEEQFIQWCQELFPYSESRLIPEDTIKLMILWVMQTALPEGDVSVDDVQFTMLNKD
IYPVIENNNGENRLNVIILETTVQSLQYLINDNWQLVPHSNALFFDGYIVPGWTDYPVTE
LRVGDSLRLYHVDDSQERRCWIVINTPLATVNLSDNNLSVTDVLAADLLSALSNETVMNR
IYCAIGTVHIDIHMLRNVKKDDIINSDGYHLFGGCQLIRNNTTIAYGSIVKINEDFYFTV
SIVCD