Protein Info for M666_RS12440 in Cellulophaga baltica 18

Annotation: carbon starvation CstA family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 472 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 80 to 99 (20 residues), see Phobius details amino acids 125 to 147 (23 residues), see Phobius details amino acids 159 to 179 (21 residues), see Phobius details amino acids 186 to 207 (22 residues), see Phobius details amino acids 227 to 244 (18 residues), see Phobius details amino acids 264 to 286 (23 residues), see Phobius details amino acids 307 to 331 (25 residues), see Phobius details amino acids 359 to 377 (19 residues), see Phobius details amino acids 385 to 404 (20 residues), see Phobius details amino acids 411 to 430 (20 residues), see Phobius details amino acids 442 to 462 (21 residues), see Phobius details PF02554: CstA" amino acids 3 to 144 (142 residues), 112.6 bits, see alignment E=1.2e-36 amino acids 162 to 286 (125 residues), 57 bits, see alignment E=8e-20 amino acids 303 to 423 (121 residues), 29.9 bits, see alignment E=1.3e-11

Best Hits

KEGG orthology group: None (inferred from 97% identity to cao:Celal_3181)

Predicted SEED Role

"Carbon starvation protein A"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (472 amino acids)

>M666_RS12440 carbon starvation CstA family protein (Cellulophaga baltica 18)
MITFITAFILLILGYFTYGKFVDKTFKSDANKTTPAHTLQDGVDFVPMNSNKNSFIQILN
IAGVGPIFGPILGALYGPSAFLWIVFGSIFAGGVHDYLTGMISIRYGGAHLPAMASRFLG
KAFSHVVNLFTLLLLVLVGTVFVTAPAEMINALLGDSDYLKVIILGIFVYYIVATVLPID
KIIGKIYPVLGVLLILSAIGICIGMFMYGNPLPELTLENLHPKKIPYYPVIFLTISCGAL
SGFHATQSPIISRTIDNEKDGRKVFYGMMILEAFIAMIWAAASMSLLDTEELSALLAEGG
PAAVVNKIAIILLGTVGGTVAIIGVIVLPITSGDTSFRAARMIIADYLNIDQKVLRNRFA
VAIPLFAISFILTNMDFQLLWRYFSWSNQVTAAIALWIGTVYLYENKKQYIIALVPAFFI
TSVIFSYIFYDPTIGFNMSPTTSNWIGLILTCLLTALFFMIMKKRKTAYPAK