Protein Info for LU632_RS25360 in Erwinia tracheiphila SCR3

Name: traO
Annotation: conjugal transfer protein TraO

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 419 transmembrane" amino acids 15 to 36 (22 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (419 amino acids)

>LU632_RS25360 conjugal transfer protein TraO (Erwinia tracheiphila SCR3)
MAAEKDARRDVKKTGLIIVIGGFAAVAFLFILVSWLNAPPEAVTHISVDKTAGGTGKATA
ESPQYQMLLRENNAEGAKQAMANNTSFIASAGSGTVRQVPPISQEAPPTPPPPRAENPLP
PPQHVPAQTLDPDRKKALEALLKELVAQRSAPVGQLASVTGQGPGQTGQTAGVPGAAAAS
PFSEWTDSLSPASQTGSVSGSGGTAADRIVIPLGSRPGGLIETAIDSDNTSSQVLARIPA
GPYAGATLTANGVQLAGDGVTIHFTNMDWNNNTWRIDAWAAMPDTLQSSVASSVNNRYTT
RILLPALAHGLGLGGQLYASANTQILSNGYNTLEGRVGMPDGKAVAGTILGGAAQQAGQV
VSQDAQKLPVKQVLVDRGQSIAVLFMSAVKESDKVIKTRDEPAAVSMQPASRMVPALHP