Protein Info for LU632_RS25130 in Erwinia tracheiphila SCR3

Annotation: DUF1320 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 140 transmembrane" amino acids 59 to 77 (19 residues), see Phobius details PF07030: Phage_Mu_Gp36" amino acids 3 to 123 (121 residues), 118.9 bits, see alignment E=7.8e-39

Best Hits

Swiss-Prot: 56% identical to GPJ_BPMU: Gene product J (J) from Escherichia phage Mu

KEGG orthology group: None (inferred from 64% identity to ecy:ECSE_2582)

Predicted SEED Role

"Mu-like prophage protein GP36"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (140 amino acids)

>LU632_RS25130 DUF1320 family protein (Erwinia tracheiphila SCR3)
MSYATVADMVKRYQRRNLDLLTKTRTDNGQPDDGIIDEALADATALMDSYIVARYTLPLT
VVPATLPQVCGVIAWYYLNDVRATEQATQRYKDAIRWLEGVRDEKIPLGTDTAGASPDGE
NLVEVVSDPSVFSRKQQGFI