Protein Info for LU632_RS25110 in Erwinia tracheiphila SCR3

Annotation: phage virion morphogenesis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 152 PF05069: Phage_tail_S" amino acids 9 to 143 (135 residues), 103.2 bits, see alignment E=6.1e-34 TIGR01635: phage virion morphogenesis protein" amino acids 10 to 145 (136 residues), 103 bits, see alignment E=7.5e-34

Best Hits

Swiss-Prot: 63% identical to GPG_BPMU: Putative capsid assembly protein G (G) from Escherichia phage Mu

KEGG orthology group: None (inferred from 62% identity to ecy:ECSE_2586)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (152 amino acids)

>LU632_RS25110 phage virion morphogenesis protein (Erwinia tracheiphila SCR3)
MSIDLAVVVDIRRIQTAFMGLGAMANDGDIPRAAASALLSSTEQAFEQESDPETGAHWAA
WSDPYLAWREKHNYIPGSILTLNGDLARSITTDYGPDWALIGSPMIYAAIHQWGGKARYT
VLEARPYMGLDKVGRKEIYVAIKKRAEMALKP