Protein Info for LU632_RS24985 in Erwinia tracheiphila SCR3

Annotation: Mu transposase C-terminal domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 663 PF02316: HTH_Tnp_Mu_1" amino acids 11 to 129 (119 residues), 29.4 bits, see alignment E=1.8e-10 PF09039: HTH_Tnp_Mu_2" amino acids 152 to 256 (105 residues), 116.7 bits, see alignment E=1.1e-37 PF02914: DDE_2" amino acids 257 to 478 (222 residues), 330.4 bits, see alignment E=1.2e-102 PF09299: Mu-transpos_C" amino acids 492 to 562 (71 residues), 54.1 bits, see alignment E=2.5e-18

Best Hits

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (663 amino acids)

>LU632_RS24985 Mu transposase C-terminal domain-containing protein (Erwinia tracheiphila SCR3)
MIDLWVTVQDCCGVAGLPAGAPNVRRKLESFVAGNEALTRKRAGSKAVEFNVCAFPAHIR
AEVLLRHNQIETSAGVIQLPEKQVDPARQKLWRNWERAGAAQREQAQERVKAVILMTELV
NSGLGVRQSAALAGKQLSVSENTLRTWYRRTRNHPRPDWGPALLDTRITSGSACVRKADF
DEKAWEWIKTDYLRLEQPALTACYQRLEKKAQETGWVIPSYDTVSRRIKEIPVEARVLLR
EGEYALSQLYPSQRRTVANMSAGEWLNGDGYKHNVWVIWHNGEECRPKTWFWQDVYSRKI
VGYYTDISENTDAIRYSLLDVIDKYGRPQHITIDNTRAAANKSLTAGVPNRYRFKVRDDD
PIGIIPMLGIYLHWTTVEYGHGNGQAKPVERAFNAGGVGEYVDKHPACAGAWTGPNPTAK
PDYQYKKNVRGNKTRPIPVETFLQALDDGIAMWNAIVGRETEICGGKLSFDQAFAASYGQ
RIHQFLPQEQLRMLMLCSEATTVRRDGTFTLKSGGQIQNQENVYKAEALLGAPVKKVVVR
FDPRNLHGDVFCYDLDGNYICQATCDVAAAFGDTQAAREHKRLKTQKIKAAKKVAKAQTQ
MDILELSELMAKPDAPATVSRPVVAFPVSGNTVRRPQPVTEEQQDNSAFNDYMESVYQQQ
LMK