Protein Info for LU632_RS24710 in Erwinia tracheiphila SCR3

Annotation: TcfC E-set like domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 796 PF16967: TcfC" amino acids 245 to 312 (68 residues), 75.1 bits, see alignment E=1.2e-25

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (796 amino acids)

>LU632_RS24710 TcfC E-set like domain-containing protein (Erwinia tracheiphila SCR3)
MTSLAPAAETTLAANIRGLPADFKRYFYDSELIVQVYLNDAHLFDAAVSLKESGDVALLR
TIDEQQEIDPATRTLWTHVLRQGVSIGKCTKSCPSGLMDVEYRLNNSVLRLYTTHYETSK
IKGAYISMPDNTPGGVIMYNDLSATNTASSRSWGINSSLISSFAGWSQKASFQSSGTDGR
YHYSSSSLYELFTQKELQGSFVRLGFFAPDSDAGNVQTAGFGYDTVAGAMWATSDTLMVS
TDSVSAWPVYVTGRNQSIAEVWRDGRLIHTQQLQAGVQALDTRQLPGGIYDITIKIIENG
QTVDTQQAQIYKPQGWSNPDRRWRMNLWSGQYRTLATGSARLREATPFAFGGGVDVLAHP
RAVLGISGAVTESDHQLRTRANITLTQNDTLFAQYTMGNTQYQSSAATDIRYYRNITGGG
SASLFWRSTTSDIYGHRISNHQQGDTWGASLSLRLPWSTSLIATGQYMDTAWRQGFASDV
AVTTLARLSGRDMNVRVSGYDRPGFDDRGRDRGVSFGVSVSLAPAARHIISAETGMNQNQ
GYSSLSYQWQPANDNGIRTLGGGVSYSASNTVISGNAAVDTRYISGDGYLQHNTQGSANT
AGGNLNQVLVFGGGKVASVNGNNSRSMESALIVDVDADDNNTGVVASGSMTETRLKAGRN
IVPAELWKKDTVQFSASGGENVQVFPAHDSVQMRRGSVKYIKVRAVKTLTIVGMLQDEGG
NVLKNRYVSSDVSGGVINPEGVLTLDSGVGNKKLVVRAEKEQPGLQCALPTDMDSGKKVQ
FISAVKCRAATVGENR