Protein Info for LU632_RS21475 in Erwinia tracheiphila SCR3

Name: aroQ
Annotation: type II 3-dehydroquinate dehydratase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 TIGR01088: 3-dehydroquinate dehydratase, type II" amino acids 6 to 145 (140 residues), 205.4 bits, see alignment E=1.4e-65 PF01220: DHquinase_II" amino acids 7 to 142 (136 residues), 203.4 bits, see alignment E=5.9e-65

Best Hits

Swiss-Prot: 84% identical to AROQ_ERWT9: 3-dehydroquinate dehydratase (aroQ) from Erwinia tasmaniensis (strain DSM 17950 / CIP 109463 / Et1/99)

KEGG orthology group: K03786, 3-dehydroquinate dehydratase II [EC: 4.2.1.10] (inferred from 90% identity to ebi:EbC_40770)

MetaCyc: 55% identical to periplasmic dehydroquinate dehydratase (Gluconobacter oxydans)
3-dehydroquinate dehydratase. [EC: 4.2.1.10]

Predicted SEED Role

"3-dehydroquinate dehydratase II (EC 4.2.1.10)" in subsystem Chorismate Synthesis or Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate) or Quinate degradation (EC 4.2.1.10)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 4.2.1.10

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (150 amino acids)

>LU632_RS21475 type II 3-dehydroquinate dehydratase (Erwinia tracheiphila SCR3)
MAEKFHILLLNGPNLNLLGTREPEKYGETTLAEIVSDLTSQADALKVKLSHLQSNAEYVL
IDRIHEAKDRVDYIVINPAALTHTSVALRDALLAVNIPFIEVHLSNVHAREPFRHHSYLS
DIATGVICGLGAEGYSWALQTAVKRLSQSN